PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00030171-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family NF-YB
Protein Properties Length: 164aa    MW: 18475.1 Da    PI: 4.3198
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00030171-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB74.41.7e-2320103386
               NF-YB   3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvy 86 
                         ++d+ lP a +++i+k++lP + ++++da++++ ec +efi +++se+++ c re+++ti+++ +l al  lGf +y+e++ + 
  WALNUT_00030171-RA  20 KEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLISSESNEVCGREEKRTIAPEHVLKALEVLGFGEYIEEVYAA 103
                         6899***************************************************************************98654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.8E-3917148IPR009072Histone-fold
SuperFamilySSF471134.02E-3521149IPR009072Histone-fold
PfamPF008082.7E-212388IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MYFVYLWLSM EPMDIVGKSK EDASLPKATM TKIIKEMLPP DVRVARDAQD LLIECCVEFI  60
NLISSESNEV CGREEKRTIA PEHVLKALEV LGFGEYIEEV YAAYEQHKIE TMDSLKGGKW  120
SNGAEMTEEE ALAEQQRMFA EARARMNGGA APPKQPDPDQ TIES
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_B8e-362114312133Transcription Regulator NC2 beta chain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018855518.11e-111PREDICTED: protein Dr1 homolog isoform X2
SwissprotP495921e-88NC2B_ARATH; Protein Dr1 homolog
TrEMBLA0A2I4HH771e-110A0A2I4HH77_JUGRE; protein Dr1 homolog isoform X2
STRINGcassava4.1_018195m1e-102(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47663358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23090.47e-93nuclear factor Y, subunit B13
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]