PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00030708-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family ERF
Protein Properties Length: 236aa    MW: 25606.5 Da    PI: 9.0853
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00030708-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.79.2e-212069255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        +++GVr ++ +gr++AeIrdp++   + r++lg+f+taeeAa+a++aa+ +++g
  WALNUT_00030708-RA 20 HFRGVRKRP-WGRYAAEIRDPCK---KSRVWLGTFDTAEEAARAYDAAAIEFRG 69
                        69*******.**********854...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003804.7E-402083IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-322078IPR001471AP2/ERF domain
PROSITE profilePS5103224.0262077IPR001471AP2/ERF domain
PfamPF008476.3E-142069IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-222078IPR016177DNA-binding domain
CDDcd000186.33E-192077No hitNo description
PRINTSPR003674.8E-112132IPR001471AP2/ERF domain
PRINTSPR003674.8E-114359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009864Biological Processinduced systemic resistance, jasmonic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0016604Cellular Componentnuclear body
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MAPRAKSAVA KGNSNDKEVH FRGVRKRPWG RYAAEIRDPC KKSRVWLGTF DTAEEAARAY  60
DAAAIEFRGA KAKTNFPLVS EDVDNKKNSH SNNQSPSQSS TVESSSREPA LMVDSSPLDL  120
NLAHGHGGGS GPANLIFPFQ QHHRQAPAVQ VFSGGIPAAN HMIFFDAIFR AGMAQGQPYQ  180
RLSFDRAPVA SDIHAAAFAH GVQSDSDSSS IVDLNHQDLK PRRVLDLNFP PPPEVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-221778264ATERF1
3gcc_A3e-221778264ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00358DAPTransfer from AT3G15210Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018811611.11e-174PREDICTED: ethylene-responsive transcription factor 4-like
RefseqXP_018853397.11e-174PREDICTED: ethylene-responsive transcription factor 4-like
RefseqXP_018853500.11e-174PREDICTED: ethylene-responsive transcription factor 4-like
TrEMBLA0A2I4DWT61e-172A0A2I4DWT6_JUGRE; ethylene-responsive transcription factor 4-like
STRINGVIT_10s0003g00140.t014e-78(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33034189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.12e-26erf domain protein 9