PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00030998-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

NF-YB

Protein Properties

Length: 239aa MW: 27177 Da PI: 9.3271

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00030998-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	30.6	8.3e-10	12	49	43	89
NF-YB 43 isfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkk 89 isf+t+eas+ ++dl wal+tlGf+dyveplkvyl++ WALNUT_00030998-RA 12 ISFITGEASKG---------RSEDLRWALTTLGFKDYVEPLKVYLQR 49 78888888843.........369**********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	5.44E-5	3	63	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	1.5E-6	4	61	IPR009072	Histone-fold
Gene3D	G3DSA:2.60.40.790	2.2E-57	93	238	IPR008978	HSP20-like chaperone
SuperFamily	SSF49764	2.88E-45	102	239	IPR008978	HSP20-like chaperone
CDD	cd06472	2.25E-44	133	221	No hit	No description
Pfam	PF00011	9.0E-32	135	238	IPR002068	Alpha crystallin/Hsp20 domain
PROSITE profile	PS01031	26.411	135	224	IPR002068	Alpha crystallin/Hsp20 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence Send to blast
MKYITKKMKF IISFITGEAS KGRSEDLRWA LTTLGFKDYV EPLKVYLQRE GGFGTGKAEL 60 QRRRRERGGT DDISFAPNFP DMSLVPSLFG GRRTNVFDPF SLDLWDPFDG LLSSAVANVP 120 PSARETAALA NLRIDWKETP EAHVFHADLP GLKKEEVKVE VEEGRILQIS GERSKEQEEK 180 NDKWHRIERS SGKFLRRFRL PENAKLDQVK ASMENGVLTV TVPKEEEKKP EVKPIEISG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gme_A	1e-59	92	239	5	151	HEAT SHOCK PROTEIN 16.9B
1gme_B	1e-59	92	239	5	151	HEAT SHOCK PROTEIN 16.9B
1gme_C	1e-59	92	239	5	151	HEAT SHOCK PROTEIN 16.9B
1gme_D	1e-59	92	239	5	151	HEAT SHOCK PROTEIN 16.9B
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018855325.1	1e-110	PREDICTED: 17.4 kDa class I heat shock protein-like
Swissprot	P13853	6e-83	HS17C_ARATH; 17.6 kDa class I heat shock protein 3
TrEMBL	A0A2I4HGN7	1e-108	A0A2I4HGN7_JUGRE; 17.4 kDa class I heat shock protein-like
STRING	XP_006488309.1	5e-88	(Citrus sinensis)
STRING	XP_006424811.1	5e-88	(Citrus clementina)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14540.1	9e-12	nuclear factor Y, subunit B3

Publications ? help Back to Top
Krause M,Durner J Harpin inactivates mitochondria in Arabidopsis suspension cells. Mol. Plant Microbe Interact., 2004. 17(2): p. 131-9 [PMID:14964527] Ma C,Haslbeck M,Babujee L,Jahn O,Reumann S Identification and characterization of a stress-inducible and a constitutive small heat-shock protein targeted to the matrix of plant peroxisomes. Plant Physiol., 2006. 141(1): p. 47-60 [PMID:16531488] Helm KW,Vierling E An Arabidopsis thaliana cDNA clone encoding a low molecular weight heat shock protein. Nucleic Acids Res., 1989. 17(19): p. 7995 [PMID:2798141]