PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00031197-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

C2H2

Protein Properties

Length: 229aa MW: 25866.3 Da PI: 7.0831

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00031197-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	23	2e-07	10	31	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C +Cgk F+r nL+ H+r H WALNUT_00031197-RA 10 FCDICGKGFKRDANLRMHMRAH 31 6*******************99 PP
2	zf-C2H2	11.3	0.001	95	118	1	23
EEETTTT.EEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCg.ksFsrksnLkrHirtH 23 y+C+ C+ ksFs +Lk+H++ + WALNUT_00031197-RA 95 YSCNRCNkKSFSVVADLKNHLKHC 118 99*******************977 PP
3	zf-C2H2	12.9	0.00032	126	142	5	21
TTTEEESSHHHHHHHHH CS zf-C2H2 5 dCgksFsrksnLkrHir 21 Cg+sFsrk+ L H+ WALNUT_00031197-RA 126 TCGTSFSRKDKLFGHMA 142 6**************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.86E-6	6	34	No hit	No description
Gene3D	G3DSA:3.30.160.60	2.8E-6	9	31	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.0017	9	31	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	12.196	9	36	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	11	31	IPR007087	Zinc finger, C2H2
SMART	SM00355	110	57	90	IPR015880	Zinc finger, C2H2-like
SMART	SM00355	13	95	117	IPR015880	Zinc finger, C2H2-like
SMART	SM00355	230	123	147	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MELLVEHIHF CDICGKGFKR DANLRMHMRA HGNQYKTAEA LAKPERHRAD PCLNTRFSCP 60 YEGCNRNRLH KKFRPLKSVT CAKNHFKRSH CPKMYSCNRC NKKSFSVVAD LKNHLKHCGE 120 ARWRCTCGTS FSRKDKLFGH MALFEGHMPA VGDEDERAKD LAEAAAVTAM DEDENEDEEE 180 DVVMVKGGEL TPENSSDNGF FDGLLDGFSS IESFCLRDVL GSPIGFDGL

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018852799.1	1e-171	PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like, partial
Swissprot	Q943I6	2e-73	STOP1_ORYSJ; Zinc finger protein STOP1 homolog
TrEMBL	A0A2I4H9H6	1e-170	A0A2I4H9H6_JUGRE; protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like
STRING	cassava4.1_009526m	1e-107	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6855	31	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.3	2e-74	C2H2 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]