PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00031245-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

MYB_related

Protein Properties

Length: 209aa MW: 22810.7 Da PI: 4.2136

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00031245-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	31.8	3.4e-10	14	43	1	30
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIart 30 +g+WT+eEd++l+ +++++G g+W++ +++ WALNUT_00031245-RA 14 KGPWTPEEDQKLLAYIEEHGHGSWRALPAK 43 79***********************98876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.2E-13	5	43	IPR009057	Homeodomain-like
PROSITE profile	PS50090	7.306	9	40	IPR017877	Myb-like domain
SuperFamily	SSF46689	1.08E-8	11	42	IPR009057	Homeodomain-like
Pfam	PF00249	7.2E-9	14	45	IPR001005	SANT/Myb domain
CDD	cd00167	3.35E-6	16	43	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 209 aa Download sequence Send to blast
MGRSPCCDKV GLKKGPWTPE EDQKLLAYIE EHGHGSWRAL PAKAENAPPV MTTAGIGETS 60 MPLIEFVGTT SGSSETGIVK DEGEQDWKPF ENSTHWSEYK EGMENSLSFT SNLHDISMSM 120 EGTWTSPESL RTSRGHVHFG NVMGDQEGFT NLLLNNFDDH QSLSDGGDDS ENGSGSGSGS 180 GSDYYEDNKN YWNSILNLVN SSPSDSPMF

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015037	2e-31	AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018806958.1	1e-110	PREDICTED: uncharacterized protein LOC108980474
TrEMBL	A0A2I4DII6	1e-109	A0A2I4DII6_JUGRE; uncharacterized protein LOC108980474
STRING	EOY03526	3e-67	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15310.1	4e-25	myb domain protein 16