PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00031281-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family TALE
Protein Properties Length: 837aa    MW: 92709.2 Da    PI: 7.1172
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00031281-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.52.7e-096516881954
                         HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         Fe   ++yp+ +++  LA+++gL+ +qV++WF N R +
  WALNUT_00031281-RA 651 FEHflHPYPTDTDKHMLATQTGLSRNQVSNWFINARVR 688
                         664459******************************87 PP
2BELL113.31.3e-36507575472
                BELL   4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                         e q+kkakL+ ++eeV++rYkqy++q+q+v+ssFe vagl sa+pY+slAl+ +SrhFrcLk+ai++q+
  WALNUT_00031281-RA 507 EYQQKKAKLIYMQEEVCRRYKQYHHQMQMVVSSFESVAGLSSATPYVSLALRSVSRHFRCLKNAITDQL 575
                         789***************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005743.1E-47412573IPR006563POX domain
PfamPF075262.3E-43417572IPR006563POX domain
PROSITE profilePS5007111.92629692IPR001356Homeobox domain
CDDcd000863.29E-11632693No hitNo description
SMARTSM003894.1E-8632696IPR001356Homeobox domain
SuperFamilySSF466891.11E-16634698IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.2E-27635696IPR009057Homeodomain-like
PfamPF059204.0E-18649688IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010223Biological Processsecondary shoot formation
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010229Biological Processinflorescence development
GO:0048645Biological Processorgan formation
GO:0080006Biological Processinternode patterning
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 837 aa     Download sequence    Send to blast
MEMSSFRPDL HVAQQSRRDK LRVPQGSNPT HRLDDFPDNL EQLPFNLRLN PDLVQVRNVN  60
NASLLYDPTV YSPEMVNISM KSNVISMQRD AMAQQEIDAA QIGRPIVAED APFANSSHPM  120
SSNFNPLSKA SIEPQNCGDW KSPGSQQNSD WMVSYASGSV GSESNTPSPM FFGEVSNISA  180
YPKYMKPSYN EFQDVRSPLK NPCSEISGQD RQKHAREIPF TSVVYQNSFQ DAFLTTSNRT  240
DGIEMASHVQ QNVRDTARST WAEGVNELAL LPTYGNQSDV LCFNDSGAWT NRPVENCHQW  300
GRQLGFPVKK SDGELRNIVS DSNPQGLSLS LSSNSSSKLP VAQFGEGCGA EDLHSRATVS  360
KDPQDLKAMK SGYFCAVEKP SIISKGYGKP LGDIVGISSN TYRNTGPLGP FTGYATILKS  420
SKFLKPAQQL LDELCGTNGS KIAKTRELSA RMSGEVSSSS DALNATETEV GIMGNNSGAS  480
SSTFYSSNDI NGEGRLGSSS WDSFWPEYQQ KKAKLIYMQE EVCRRYKQYH HQMQMVVSSF  540
ESVAGLSSAT PYVSLALRSV SRHFRCLKNA ITDQLKYIRK ATGEDFSLPT TGTSNCKVDA  600
NTPKLRYLDQ SLQRHKYGGG NVGFLETQQH VWRPQRGLPE RSVAILRAWL FEHFLHPYPT  660
DTDKHMLATQ TGLSRNQVSN WFINARVRVW KPMVEEIHML ETKGLADANQ NPSKNDGNSA  720
VEGNNHPDPD QPSNNPSNKQ MECLGTGSAT STVHGRSAEQ WNQEKRSRID CQIPTSIDGS  780
LMGFMPYQRN GLDISGLGAV SLTLGLRHGA ENAQHQQPQE DHHIRREFGG MIHDFVG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A3e-15638696563Homeobox protein Meis2
3k2a_B3e-15638696563Homeobox protein Meis2
4xrs_A3e-15638695158Homeobox protein Meis1
4xrs_B3e-15638695158Homeobox protein Meis1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018857333.10.0PREDICTED: BEL1-like homeodomain protein 9 isoform X1
TrEMBLA0A2I4HME90.0A0A2I4HME9_JUGRE; BEL1-like homeodomain protein 9 isoform X1
STRINGEOY344170.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34813257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27990.14e-93BEL1-like homeodomain 8