PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00031381-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

FAR1

Protein Properties

Length: 179aa MW: 20265.9 Da PI: 7.9619

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00031381-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	36.5	1.6e-11	96	157	2	67
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklk 67 +Y +YAk++GF v+k++s+ ++g+ + t+ C ++g+++++ ++ r+r+++++gCkak++ WALNUT_00031381-RA 96 YYTNYAKRMGFGVSKRSSNVG-DDGRLKYFTLACVRQGTSRSKASN---VLRPRSVEKMGCKAKIN 157 8************998887.8999**********999888...999*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.3E-9	96	157	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 179 aa Download sequence Send to blast
MWFLTSIRSL SLIRRLFVET SRESDANALK PHLSLHHFCS WEKLNSGVMD SNVSHIEDKE 60 DTFCEPDGKE GDEGDNVVEE PKVGMIFSLE EEVRLYYTNY AKRMGFGVSK RSSNVGDDGR 120 LKYFTLACVR QGTSRSKASN VLRPRSVEKM GCKAKINDLK ANKQITQEPV QDNTIKGNV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018831967.1	1e-69	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_018831969.1	1e-69	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_018831970.1	1e-69	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_018831971.1	1e-69	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2I4FJZ0	2e-68	A0A2I4FJZ0_JUGRE; protein FAR1-RELATED SEQUENCE 5-like

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13793	7	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	2e-11	FAR1 family protein