PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00031444-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family TALE
Protein Properties Length: 354aa    MW: 40098.8 Da    PI: 5.7788
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00031444-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.91.5e-073043362254
                         SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          +yp++e++++L +++gL+ +q+ +WF N+R +
  WALNUT_00031444-RA 304 WPYPTEEDKARLVQETGLQLKQINNWFINQRKR 336
                         59*****************************87 PP
2ELK30.57.9e-11257278122
                 ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                         ELKh+L+++Y+++++++++E++
  WALNUT_00031444-RA 257 ELKHELKQGYKEKIVDVREEIL 278
                         9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012555.3E-1993137IPR005540KNOX1
PfamPF037901.3E-1796136IPR005540KNOX1
SMARTSM012565.5E-27145200IPR005541KNOX2
PfamPF037917.4E-20150199IPR005541KNOX2
PfamPF037894.6E-7257278IPR005539ELK domain
SMARTSM011888.9E-4257278IPR005539ELK domain
PROSITE profilePS512139.83257277IPR005539ELK domain
PROSITE profilePS5007111.677277340IPR001356Homeobox domain
SuperFamilySSF466894.71E-16279343IPR009057Homeodomain-like
SMARTSM003897.6E-11279344IPR001356Homeobox domain
CDDcd000862.80E-11280341No hitNo description
Gene3DG3DSA:1.10.10.606.4E-25284341IPR009057Homeodomain-like
PfamPF059209.3E-18297336IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0009722Biological Processdetection of cytokinin stimulus
GO:0071345Biological Processcellular response to cytokine stimulus
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MTFDSFGDHD DREAVHQRLM LDTTGKTPLS VTVSEAGGSG APTWLSDAIL RRQDSVHLRG  60
RQDEVSAIMN SGESGDRNRT ESECEATWEW ESAKQKADIA AHPLYEQLLS AHVACLRIAT  120
PVDQLPRIDA QLAQSQRVVA KYSVLGNGSV DDKELDQFMT HYVLLLCSFK EQLQQHVRVH  180
AMEAVMACWE LEQSLQSLTG VSPVDSTGAT MSDDEDDQAD SDTNLYDGNM DGHDSMGFGP  240
LIPTESERSL MERVRQELKH ELKQGYKEKI VDVREEILRK RRAGKLPGDT TSLLKAWWQS  300
HSKWPYPTEE DKARLVQETG LQLKQINNWF INQRKRNWHS NPSSPTVVKS KRKR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A2e-12280344872Homeobox protein PKNOX1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1333353RKRNWHSNPSSPTVVKSKRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018852986.10.0PREDICTED: homeobox protein knotted-1-like 3 isoform X2
RefseqXP_018853251.10.0PREDICTED: homeobox protein knotted-1-like 3 isoform X2
RefseqXP_018853485.10.0PREDICTED: homeobox protein knotted-1-like 3 isoform X2
SwissprotP480001e-168KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLA0A2I4HBG50.0A0A2I4HBG5_JUGRE; homeobox protein knotted-1-like 3 isoform X2
STRINGVIT_11s0118g00800.t011e-179(Vitis vinifera)
STRINGXP_004514060.11e-180(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.21e-164KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]