PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00031499-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

M-type_MADS

Protein Properties

Length: 69aa MW: 7824.33 Da PI: 10.618

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00031499-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	67.2	1.6e-21	26	67	5	46
SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS SRF-TF 5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46 ++s++qvtfskRr+g++KKA EL+v C+ eva+i+fs+++++ WALNUT_00031499-RA 26 EESKKQVTFSKRRAGLFKKAGELCVVCGLEVAIIVFSPHNNV 67 6899**********************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55455	4.32E-21	14	68	IPR002100	Transcription factor, MADS-box
SMART	SM00432	2.1E-18	14	68	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	22.035	14	69	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.0E-16	16	36	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.1E-21	26	68	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.0E-16	36	51	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.0E-16	51	69	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 69 aa Download sequence Send to blast
MVIQKKMSEG KKTRGRQRIE IKELAEESKK QVTFSKRRAG LFKKAGELCV VCGLEVAIIV 60 FSPHNNVFC

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269\|PubMed:18334668}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018857898.1	5e-40	PREDICTED: agamous-like MADS-box protein AGL61
Swissprot	Q9FKK2	2e-20	AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBL	A0A2I4HP27	1e-38	A0A2I4HP27_JUGRE; agamous-like MADS-box protein AGL61
STRING	XP_004496799.1	6e-22	(Cicer arietinum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	7e-23	AGAMOUS-like 62

Publications ? help Back to Top
Xu W, et al. Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds. Plant Cell, 2016. 28(6): p. 1343-60 [PMID:27233529] Figueiredo DD,Batista RA,Roszak PJ,Köhler C Auxin production couples endosperm development to fertilization. Nat Plants, 2015. 1: p. 15184 [PMID:27251719] Figueiredo DD,Batista RA,Roszak PJ,Hennig L,Köhler C Auxin production in the endosperm drives seed coat development in Arabidopsis. Elife, 2017. [PMID:27848912] Fiume E,Coen O,Xu W,Lepiniec L,Magnani E Growth of the Arabidopsis sub-epidermal integument cell layers might require an endosperm signal. Plant Signal Behav, 2017. 12(8): p. e1339000 [PMID:28613109] Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]