PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00031530-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family ZF-HD
Protein Properties Length: 191aa    MW: 21168.5 Da    PI: 8.596
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00031530-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer941.2e-291059557
         ZF-HD_dimer  5 rYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57
                         Y+eClkNhAaslG++a+DGCgEf+ +   ++++ +l+CaACgCHRnFHR+ +
  WALNUT_00031530-RA 10 LYRECLKNHAASLGSYATDGCGEFTLD---DTSPGSLQCAACGCHRNFHRKVT 59
                        7*************************8...6789*****************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047702.2E-241059IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-171157IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.9E-251157IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152323.2361158IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.601.4E-28106176IPR009057Homeodomain-like
SuperFamilySSF466891.67E-15109174IPR009057Homeodomain-like
TIGRFAMsTIGR015656.6E-28116174IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MEADRSTNDL YRECLKNHAA SLGSYATDGC GEFTLDDTSP GSLQCAACGC HRNFHRKVTY  60
IPTHHGRSGL SYSSRGRDPE TTTTDLMEYS GGGGGRQAVM AMVESGEAAE RSSFSKKRFR  120
TKFTQDQKEK MLAFAEKLGW KLQRKDLDEE IERFCRSVGV SRQVFKVWMH NHKNSSSSSS  180
ASTGNASSLT Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A7e-241171791879ZF-HD homeobox family protein
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY4799587e-83AY479958.1 Juglans nigra microsatellite wga118 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018860288.11e-142PREDICTED: zinc-finger homeodomain protein 10-like
TrEMBLA0A2I4HVX41e-141A0A2I4HVX4_JUGRE; zinc-finger homeodomain protein 10-like
STRINGXP_010069461.11e-82(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF79822844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15210.17e-42homeobox protein 30