PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00031562-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family ARF
Protein Properties Length: 662aa    MW: 72373.6 Da    PI: 7.5847
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00031562-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3733.6e-23123224199
                         EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                         f k+lt+sd+++ g +++p+ +ae++        +++ +  t+  +d +g  W++++iyr++++r++lt+GW++Fv++++L +gD++vF +
  WALNUT_00031562-RA 123 FAKTLTQSDANNGGGFSVPRYCAETIfprldynAEPPVQ--TILAKDVHGGIWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSIVFLR 211
                         89****************************985444444..8999*********************************************3 PP

                         -SSSEE..EEEEE-S CS
                  B3  85 dgrsefelvvkvfrk 99 
                            +++ l+v+v+r+
  WALNUT_00031562-RA 212 --ADNGDLCVGVRRA 224
                         ..477888****996 PP
2Auxin_resp111.76.9e-37284367183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                         aa+ a+++++FevvY+Prast+eF vk++ v++al++++  GmRfkm fetedss++++ +Gtv++v+ +dpvrWp+S+Wr+L+
  WALNUT_00031562-RA 284 AATLAANGQPFEVVYYPRASTPEFFVKASAVRAALQIQWYSGMRFKMPFETEDSSRISWfMGTVSSVQVADPVRWPDSPWRLLQ 367
                         68899*****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.58E-29116226IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.4E-36116226IPR015300DNA-binding pseudobarrel domain
CDDcd100179.28E-21122223No hitNo description
SMARTSM010195.3E-22123225IPR003340B3 DNA binding domain
PfamPF023629.0E-21123224IPR003340B3 DNA binding domain
PROSITE profilePS5086312.844123225IPR003340B3 DNA binding domain
PfamPF065078.0E-32284367IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 662 aa     Download sequence    Send to blast
MITVMDSVKE VPARNSDKCL DSQLWHACAG VMVQMPPINS KVFYFPQGHA EHVLCGATDI  60
GDSRIPSLIL CRVSGIRYMA DPETDEVFAK IKLIPLRDGK WDFEDDGFAG NSGIEGQEKP  120
VSFAKTLTQS DANNGGGFSV PRYCAETIFP RLDYNAEPPV QTILAKDVHG GIWKFRHIYR  180
GTPRRHLLTT GWSSFVNQKK LVAGDSIVFL RADNGDLCVG VRRAKRGIGG GTEYLSGWNQ  240
DVTKTGSPFG GYSGILREGE NKLNRRNSGV ELRGRVSGES VAEAATLAAN GQPFEVVYYP  300
RASTPEFFVK ASAVRAALQI QWYSGMRFKM PFETEDSSRI SWFMGTVSSV QVADPVRWPD  360
SPWRLLQVAW DEPDLLQNVK RVSPWLVELV SNLPVIHLPP FSPPRKKLRL PQHPDYSLIG  420
QFPMSSLSSN LLNPSSPLSR ISGNIPASIQ GARHVQFGPS SGDLQSNKMQ TSLFPVGFQQ  480
LDHAAPPPRV PCGKFMEGAD KNDLSCLLTI GGSTQNLKET KQVKAPHIVL FGQLILTEEQ  540
QGSKSCSGDA TGNSSSDGSP EKMANFSDGS GSVSRQNGSG ENSSDGGSPW YRDHQKHNPA  600
LETGHCKVFM ESKDVGRTTL DPSLLESYEE FHGKLASMFG MGSSHSLNSM LYQDAVGAVN  660
RS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-802038851388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018853662.10.0PREDICTED: auxin response factor 18-like
RefseqXP_018853663.10.0PREDICTED: auxin response factor 18-like
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A2I4HC220.0A0A2I4HC22_JUGRE; Auxin response factor
STRINGGorai.011G238900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]