PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00031675-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family HD-ZIP
Protein Properties Length: 226aa    MW: 25652.6 Da    PI: 5.7078
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00031675-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox603.9e-191970556
                        SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox  5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                        ++f++eq++ Le +Fe ++ p a+ +++LA++lgL  rqV +WFqNrRa+ k
  WALNUT_00031675-RA 19 RRFNEEQTKSLEVMFEAESRPEAQVKQQLANELGLRPRQVAIWFQNRRARLK 70
                        68************************************************98 PP
2HD-ZIP_I/II105.15.6e-3418108393
         HD-ZIP_I/II   3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                          rr+++eq k+LE +Fe+e++ e + K++la+eLgl+prqva+WFqnrRAR kt+q+E++y +Lk++yd+l+++ e+L++e+++L  +l++
  WALNUT_00031675-RA  18 MRRFNEEQTKSLEVMFEAESRPEAQVKQQLANELGLRPRQVAIWFQNRRARLKTRQIEREYCMLKASYDNLASNFESLKRENHQLLIQLQK 108
                         69***********************************************************************************999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.33E-17873IPR009057Homeodomain-like
PROSITE profilePS5007117.9121272IPR001356Homeobox domain
SMARTSM003899.9E-161476IPR001356Homeobox domain
CDDcd000863.73E-141673No hitNo description
Gene3DG3DSA:1.10.10.602.7E-171977IPR009057Homeodomain-like
PfamPF000461.8E-161970IPR001356Homeobox domain
PRINTSPR000312.4E-54352IPR000047Helix-turn-helix motif
PROSITE patternPS0002704770IPR017970Homeobox, conserved site
PRINTSPR000312.4E-55268IPR000047Helix-turn-helix motif
PfamPF021832.3E-1673113IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MPESELHNLI CSRKNKNMRR FNEEQTKSLE VMFEAESRPE AQVKQQLANE LGLRPRQVAI  60
WFQNRRARLK TRQIEREYCM LKASYDNLAS NFESLKRENH QLLIQLQKLK NLLGKQHGNE  120
KGSSSAGESE KGDPIFEAKD KPSMSILPEG DDQKTNMLPG AGDTNCGNAQ CSEEETGILK  180
TAQPIIDHGS QTSSDDWCNC FPDDSSGNSQ WWELWSSSIA HPLQLT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018831909.11e-169PREDICTED: homeobox-leucine zipper protein ATHB-12-like
TrEMBLA0A2I4FJT91e-167A0A2I4FJT9_JUGRE; homeobox-leucine zipper protein ATHB-12-like
STRINGEOY238895e-57(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16057910
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.23e-32homeobox 7