PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00031796-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family ERF
Protein Properties Length: 159aa    MW: 18075.2 Da    PI: 9.4232
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00031796-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.24.3e-183584255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         y+G+r +k +g+WvAeIr+p   +kr r++lg++ t+  Aa+a++ a  +l+g
  WALNUT_00031796-RA 35 PYRGIRMRK-WGKWVAEIREP---NKRSRIWLGSYITPIAAARAYDTAVFYLRG 84
                        69*****99.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.0E-343598IPR001471AP2/ERF domain
PROSITE profilePS5103221.8523592IPR001471AP2/ERF domain
SuperFamilySSF541713.4E-203593IPR016177DNA-binding domain
PRINTSPR003677.2E-123647IPR001471AP2/ERF domain
CDDcd000183.04E-263694No hitNo description
Gene3DG3DSA:3.30.730.101.1E-293693IPR001471AP2/ERF domain
PfamPF008471.5E-103684IPR001471AP2/ERF domain
PRINTSPR003677.2E-127494IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MGDHRHHPAM EGTCFSTSTS AEKRKQRQQQ HQEKPYRGIR MRKWGKWVAE IREPNKRSRI  60
WLGSYITPIA AARAYDTAVF YLRGPSARLN FPDLIFQEDR HVNDLGDISA ASIRKKATEV  120
GARVDAIEAA HHPSQPKSGR VSEPPDLNEY PGPENSDED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-143492463ATERF1
3gcc_A1e-143492463ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00188DAPTransfer from AT1G46768Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018858588.11e-117PREDICTED: ethylene-responsive transcription factor RAP2-1-like
SwissprotQ8LC302e-52RAP21_ARATH; Ethylene-responsive transcription factor RAP2-1
TrEMBLA0A2I4HR041e-115A0A2I4HR04_JUGRE; ethylene-responsive transcription factor RAP2-1-like
STRINGVIT_18s0001g10150.t014e-72(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF129032106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46768.17e-53related to AP2 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]