 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
WALNUT_00032186-RA |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 280aa MW: 31369.9 Da PI: 10.2741 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| WALNUT_00032186-RA | genome | JHU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 348.2 | 1.8e-106 | 1 | 280 | 1 | 301 |
GAGA_bind 1 mdddgsrernkgyyepaaslkenlglqlmssiaerdaki....rernlalsek.kaavaerd.........maflqrdkalaernkalver 77
mddd+ + rn+gyyep+ +k +lglqlmss+a+rd+k r+ n + ++ ++++++rd ++ rd++ ++
WALNUT_00032186-RA 1 MDDDALNMRNWGYYEPS--FKGHLGLQLMSSMADRDTKHflpgRDPNSIMVNPvNGTFHPRDcvvseapvpLNY-VRDSWANQ-------- 80
9***9999*******99..************************999987766537899****888888887777.78888877........ PP
GAGA_bind 78 dnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkk 168
++k+l++l+++ + + vl++t+ ++slq l+++a + e + +ie ++++++e+ ++kkrq++ pk++kakk++
WALNUT_00032186-RA 81 RDKFLNMLPANPN--------YAVLPETSGAHSLQI-----LQPPALPRD--E--RVSKIE-EPPVKNERGQMKKRQSGDAPKTPKAKKPR 153
889******6654........899**********99.....888888822..2..233443.4677888999999999*********9999 PP
GAGA_bind 169 kksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrK 259
k ++++++++ +r+k kk+id+v+ng+++D+s++P+PvCsCtG+++qCY+WG+GGWqSaCCtt++S+yPLP+stkrrgaRiagrK
WALNUT_00032186-RA 154 K----PRDNNNSSV--QRVKPAKKNIDVVINGIDMDISGIPIPVCSCTGTPQQCYRWGCGGWQSACCTTNVSMYPLPMSTKRRGARIAGRK 238
9....333444444..689************************************************************************ PP
GAGA_bind 260 mSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
mSqgafkk+LekLaaeGy+++np+DL++hWA+HGtnkfvtir
WALNUT_00032186-RA 239 MSQGAFKKVLEKLAAEGYNFANPIDLRTHWARHGTNKFVTIR 280
*****************************************8 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0050793 | Biological Process | regulation of developmental process |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 280 aa
Download sequence Send
to blast |
MDDDALNMRN WGYYEPSFKG HLGLQLMSSM ADRDTKHFLP GRDPNSIMVN PVNGTFHPRD 60
CVVSEAPVPL NYVRDSWANQ RDKFLNMLPA NPNYAVLPET SGAHSLQILQ PPALPRDERV 120
SKIEEPPVKN ERGQMKKRQS GDAPKTPKAK KPRKPRDNNN SSVQRVKPAK KNIDVVINGI 180
DMDISGIPIP VCSCTGTPQQ CYRWGCGGWQ SACCTTNVSM YPLPMSTKRR GARIAGRKMS 240
QGAFKKVLEK LAAEGYNFAN PIDLRTHWAR HGTNKFVTIR
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}. |
