PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004485733.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB_related
Protein Properties Length: 481aa    MW: 54105.8 Da    PI: 10.5703
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004485733.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.75.6e-08841236
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS- CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRt 36
                     grW t+E++ll  av ++G+++Wk +a+++   Rt
   XP_004485733.1  8 GRWGTWEELLLGGAVLRYGTRDWKVVAAELR-SRT 41
                     8*****************************9.998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF002493.2E-6842IPR001005SANT/Myb domain
CDDcd001670.00675956No hitNo description
SuperFamilySSF473704.32E-20261373IPR001487Bromodomain
Gene3DG3DSA:1.20.920.107.1E-18263375IPR001487Bromodomain
SMARTSM002972.3E-20269373IPR001487Bromodomain
PfamPF004391.2E-12278358IPR001487Bromodomain
PROSITE profilePS500149.877284354IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MMGTKVMGRW GTWEELLLGG AVLRYGTRDW KVVAAELRSR TVCPYTFTPE VCKAKYEDLQ  60
KRYSGSTAWF EELKKTRVAE LKRALELSED SIGSLQSKLE FLKSGKNEKK DDCENGSRSP  120
VSHVPSHKLE RVESSTKETS KDGLSAGSFT HEMRTNWSPE CHVPARSVDD IETKPEVSQS  180
SEQVKVLNVD NLAHIYEGLG VVGASFRKRR GKRKRKDCSK NIKEASVGES DLLDSTDVIS  240
WCKESSTTSN CGEVAKSCAD VNDRNKNLKK HCTEDMIEIL DSVFETKGAS AFRRRLDGQK  300
RGRYKKMIRR HMDFDTIRSR ISNQTIKSTI ELFRDLLLLA NNALVFYSKN TREHKTAQLL  360
RDIVTKKMRE SFKDNTISSR KVTQVNESMK LPINNLHVKP RSVRPGSRKI TAKAIDGNNS  420
AFGMTQGAKK PSKADSPPSV ESLTVTKKAA FGRPKKVGRV TSGQKTTTTP MKGRKRVRTK  480
S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1208216RRGKRKRKD
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004485733.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004485733.10.0uncharacterized protein LOC101507433 isoform X2
TrEMBLA0A1S2X9N90.0A0A1S2X9N9_CICAR; uncharacterized protein LOC101507433 isoform X2
STRINGXP_004485733.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42150.13e-34DNA-binding bromodomain-containing protein