PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004485802.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family SBP
Protein Properties Length: 145aa    MW: 17380.3 Da    PI: 6.9297
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004485802.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP129.41.3e-4059135177
                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                     +Cqv++C+adls ak+yh+rhkvCe+h+ka +vl+++l+qrfCqqCsrfhe+sefDe krsCrrrLa+hnerrrk+ 
  XP_004485802.1  59 CCQVDNCNADLSVAKQYHKRHKVCEHHAKAHSVLIQDLQQRFCQQCSRFHEVSEFDELKRSCRRRLAGHNERRRKNV 135
                     6**************************************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0375752.1E-596145IPR017238Squamosa promoter-binding protein
Gene3DG3DSA:4.10.1100.106.3E-3353121IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.41157134IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.35E-3658137IPR004333Transcription factor, SBP-box
PfamPF031105.2E-3260133IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MDERWGEEKK IYDYKEENIE YEEEEEDDED EEEVLKEKKR VMKSYKKKGS KAGGSVLPCC  60
QVDNCNADLS VAKQYHKRHK VCEHHAKAHS VLIQDLQQRF CQQCSRFHEV SEFDELKRSC  120
RRRLAGHNER RRKNVSEYHG EGFNR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A6e-3652133384squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004485802.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1463371e-102BT146337.1 Medicago truncatula clone JCVI-FLMt-8A17 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004485802.11e-102squamosa promoter-binding-like protein 3
SwissprotQ387411e-42SBP1_ANTMA; Squamosa promoter-binding protein 1
TrEMBLA0A1S2X9S61e-100A0A1S2X9S6_CICAR; Squamosa promoter-binding-like protein
STRINGXP_004485802.11e-101(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53534153
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53160.22e-38squamosa promoter binding protein-like 4
Publications ? help Back to Top
  1. Klein J,Saedler H,Huijser P
    A new family of DNA binding proteins includes putative transcriptional regulators of the Antirrhinum majus floral meristem identity gene SQUAMOSA.
    Mol. Gen. Genet., 1996. 250(1): p. 7-16
    [PMID:8569690]