PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004485857.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family WOX
Protein Properties Length: 408aa    MW: 45315.6 Da    PI: 8.1331
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004485857.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.78.4e-1854114257
                     T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                     ++R+++++eq+++Le+ F++   +p ++e++++ ++l    ++ +++V++WFqNr+ + k+
  XP_004485857.1  54 KPRWNPKPEQIRILEAIFNSgMVNPPRDEIRKIRAQLqeygQVGDANVFYWFQNRKSRSKH 114
                     89*****************99*************************************995 PP
2Wus_type_Homeobox112.13e-3653115264
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                        +++RW+P+peQi+iLe++++sG+++P+++ei++i+a+L+eyG+++d+NVfyWFQNrk+R+++k
     XP_004485857.1  53 PKPRWNPKPEQIRILEAIFNSGMVNPPRDEIRKIRAQLQEYGQVGDANVFYWFQNRKSRSKHK 115
                        689**********************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.6E-736113IPR009057Homeodomain-like
PROSITE profilePS5007110.51150115IPR001356Homeobox domain
SuperFamilySSF466895.13E-1250118IPR009057Homeodomain-like
SMARTSM003896.8E-952119IPR001356Homeobox domain
CDDcd000864.47E-853115No hitNo description
PfamPF000462.2E-1554114IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009735Biological Processresponse to cytokinin
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010075Biological Processregulation of meristem growth
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MASSNRHWPS MFKSKPACNP HHQWQHDINS SLISSSCHRT PYSSGCEERS PEPKPRWNPK  60
PEQIRILEAI FNSGMVNPPR DEIRKIRAQL QEYGQVGDAN VFYWFQNRKS RSKHKLRHLQ  120
NQNSSKNQQN ILNQEPPTQQ QNPNPISSSL PQITPPSSSS SSSEKSPPKE IIPSKVFSLG  180
FSNINDVVPN SPTTSVNQTY LHSQNETTLL PPPPQQQQVA SATNETNFFF PMQQHGQGIV  240
LPNNVVTSQG FCFSELSNMV HAQPHNTGHC TSFLLSEIMN HGANSSKKDQ DQDNKSVKIM  300
HQIPHFNFCF TPTTSTTTVV PPTTSSTITV PSPIISHAQG HGETGVTAAR SMVFINDVAF  360
EVASGPFNVR EAFGDEAVLI HATGQPVLTN QWGVTLQSLH HGACYYLI
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004485857.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004485857.10.0WUSCHEL-related homeobox 9-like isoform X2
TrEMBLA0A1S2X9U50.0A0A1S2X9U5_CICAR; WUSCHEL-related homeobox 9-like isoform X2
STRINGXP_004485856.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.14e-67homeobox-3