PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004485860.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family ERF
Protein Properties Length: 260aa    MW: 29495.1 Da    PI: 6.3742
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004485860.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.78.1e-20112162255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+++AeIrd s+  k++r++lg+f taeeAa a+++a+++++g
  XP_004485860.1 112 HYRGVRRRP-WGKYAAEIRDSSK--KSARVWLGTFNTAEEAALAYDKAALRIRG 162
                     8********.**********422..45*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.1E-32111171IPR001471AP2/ERF domain
CDDcd000182.93E-31111171No hitNo description
SuperFamilySSF541714.12E-23112171IPR016177DNA-binding domain
PfamPF008477.1E-15112162IPR001471AP2/ERF domain
SMARTSM003802.8E-36112176IPR001471AP2/ERF domain
PROSITE profilePS5103223.762112170IPR001471AP2/ERF domain
PRINTSPR003674.8E-11113124IPR001471AP2/ERF domain
PRINTSPR003674.8E-11136152IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MENIHNSNNN HHATNSNEIL ESVWAKIINN DARTTNGNAI ECSNTWEELP NLQRLPSLGR  60
WISMGADFWE EILATSINKE DSCNYKNIEI GSVGIKSKKK VEECVRKEKA KHYRGVRRRP  120
WGKYAAEIRD SSKKSARVWL GTFNTAEEAA LAYDKAALRI RGSKACLNFP IEKVTNALRT  180
CGEKGLIDDV STIYDFGNRE SLLDSRKRGL RDRGEFVDVM NEEPAMKKIA GLEHMLENDD  240
DVFVFQDLGS DYLDSLLSSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-29109171264ATERF1
3gcc_A5e-29109171264ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00441DAPTransfer from AT4G18450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004485860.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1997609e-80AC199760.2 Medicago truncatula chromosome 2 BAC clone mth2-104L7, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004485860.10.0ethylene-responsive transcription factor 1B
TrEMBLA0A1S2XBV70.0A0A1S2XBV7_CICAR; ethylene-responsive transcription factor 1B
STRINGXP_004485860.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95473142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18450.11e-25ERF family protein