PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004486310.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

NF-YC

Protein Properties

Length: 223aa MW: 25757.1 Da PI: 5.0466

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004486310.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	152.2	9.7e-48	71	172	2	100
NF-YC 2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflv 93 l++fw++q ie+++++ nh lPlarikk++k+de+v+misae+Pvl++kace+fi+e+t+rsw hae n+++t++ksdia+a+++td+fdflv XP_004486310.1 71 LENFWINQnheIEESNNLGNHCLPLARIKKVMKSDEQVSMISAEVPVLFAKACEMFIMEMTMRSWAHAEMNQKKTIQKSDIASAISSTDVFDFLV 165 899*999999******************************************************************************* PP NF-YC 94 divprde 100 divpr+e XP_004486310.1 166 DIVPREE 172 ***97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	3.26E-29	58	164	IPR009072	Histone-fold
Pfam	PF00808	3.8E-19	93	155	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	9.9E-34	93	170	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence Send to blast
MNQKRQEEEE EGNEETQSES ESKQIVAISR PLIQTPGASA FSCYLNRDKL PKYFRHSILQ 60 QQKQQELKKK LENFWINQNH EIEESNNLGN HCLPLARIKK VMKSDEQVSM ISAEVPVLFA 120 KACEMFIMEM TMRSWAHAEM NQKKTIQKSD IASAISSTDV FDFLVDIVPR EEDTMDHEIF 180 RRRESVPYYY VPLPPHHAAP PGMFMGTPEL LPNPNQENGD SSD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	1e-42	76	170	1	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004486310.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004486310.1	1e-168	nuclear transcription factor Y subunit C-2-like
Swissprot	Q9SMP0	8e-52	NFYC1_ARATH; Nuclear transcription factor Y subunit C-1
TrEMBL	A0A1S2XCU1	1e-166	A0A1S2XCU1_CICAR; nuclear transcription factor Y subunit C-2-like
STRING	XP_004486310.1	1e-167	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1257	34	108

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63470.2	7e-48	nuclear factor Y, subunit C4

Publications ? help Back to Top
Shi H,Chan ZL AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway. Plant Signal Behav, 2015. [PMID:24831307] Shi H,Chan ZL AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway. Plant Signal Behav, 2014. 9(7): p. e29109 [PMID:25763489] Tang Y, et al. Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation. Mol Plant, 2017. 10(2): p. 260-273 [PMID:27876642] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]