PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004486450.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family HD-ZIP
Protein Properties Length: 844aa    MW: 92754.7 Da    PI: 6.2752
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004486450.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.42.4e-181775357
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    k  ++t+eq+e+Le+++ ++++p+  +r++L +++    +++ +q+kvWFqNrR +ek+
  XP_004486450.1 17 KYVRYTPEQVEALERVYSECPKPTSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 75
                    5678*****************************************************97 PP
2START173.91e-541653722204
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 
                     +aee+++e+++ka+ ++  Wv++  +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W ++++ +++l  + +g  g+++lm
  XP_004486450.1 165 IAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGIAARACGLVSLEPT-KVAEILKDRLSWYRDCRCIDVLSIVPTGggGTIELM 258
                     68999*****************************************************.8999999999************************** PP

                     EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS
           START  95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185
                     +++++a+++l++ Rdf+++Ry+ +l++g++vi+++S++  +  p+   +s++vRae+lpSg+li+p+++g+s +++v+hvdl+ ++++++lr+l+
  XP_004486450.1 259 YMQTYAPTTLAAaRDFWTLRYTTSLEDGSLVICERSLNASTGGPTgppQSNFVRAEMLPSGFLIRPCEGGGSIIHIVDHVDLDVWSVPEVLRPLY 353
                     ***************************************999998899*********************************************** PP

                     HHHHHHHHHHHHHHTXXXX CS
           START 186 ksglaegaktwvatlqrqc 204
                     +s+ + ++k + a+lq+ +
  XP_004486450.1 354 ESSKILAQKLTIAALQHIR 372
                     ****************866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.0E-19775IPR009057Homeodomain-like
PROSITE profilePS5007115.5321276IPR001356Homeobox domain
SMARTSM003894.0E-151480IPR001356Homeobox domain
SuperFamilySSF466891.58E-161679IPR009057Homeodomain-like
CDDcd000863.63E-161777No hitNo description
PfamPF000468.3E-161875IPR001356Homeobox domain
CDDcd146862.37E-669108No hitNo description
PROSITE profilePS5084825.657155356IPR002913START domain
CDDcd088753.33E-70159375No hitNo description
Gene3DG3DSA:3.30.530.201.5E-22163347IPR023393START-like domain
SMARTSM002341.6E-50164374IPR002913START domain
SuperFamilySSF559618.65E-37165376No hitNo description
PfamPF018523.6E-52165372IPR002913START domain
SuperFamilySSF559611.37E-5412497No hitNo description
SuperFamilySSF559611.37E-5525599No hitNo description
PfamPF086707.3E-50699843IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 844 aa     Download sequence    Send to blast
MALSMHKDSN NQMDSGKYVR YTPEQVEALE RVYSECPKPT SLRRQQLIRE CPILSNIEPK  60
QIKVWFQNRR CREKQRKEAS RLQTVNRKLS AMNKLLMEEN DRLQKQVSHL VYENGYMKQQ  120
IHTVSAATTT DNSCESVVMS GQNQQQNPTQ HPQRDANNPA GLLAIAEETL AEFLSKATGT  180
AVDWVQMIGM KPGPDSIGIV AVSRNCSGIA ARACGLVSLE PTKVAEILKD RLSWYRDCRC  240
IDVLSIVPTG GGGTIELMYM QTYAPTTLAA ARDFWTLRYT TSLEDGSLVI CERSLNASTG  300
GPTGPPQSNF VRAEMLPSGF LIRPCEGGGS IIHIVDHVDL DVWSVPEVLR PLYESSKILA  360
QKLTIAALQH IRQIAQESSG EIQYGGGRQP AVLRTFSQRL CRGFNDAVNG FVDDGWSLLG  420
NDGVEDVTIT VNSSPNKFLG SNYNSSMFPS FGGGVLCAKA SMLLQNVPPA LLVRFLREHR  480
SEWADYGVDA YSSACLKTSP YAVPCPRPGG FPSSQVILPL AHTIEHEEFL EVVRIEGHAF  540
SPEDVALARD MYLLQLCSGI DENSIGACAQ LVFAPIDESF ADDALLLPSG FRVIPLDPKS  600
DGPAATRTLD LASTLEVGSG NARLSGEGDL NGYNLRSVLT IAFQFTFENH MRDNVAAMAR  660
QYVRSVVGSV QRVAMAIAPS RLGTQLGPKS LPGSPEAHAL ARWICRSYRM HTGSELFRTE  720
SSASDAILKQ LWHHSDAILC CSVKTNASPI FTFANQAGLD MLETTLVALQ DIMLDKVLDE  780
AGRKILCSEF SKIMQQGFAY LPAGICVSSM NRPVSYDQAI AWKVLNDDDA NHCLAFMFIN  840
WSFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004486450.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004486450.10.0homeobox-leucine zipper protein ATHB-14
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLA0A1S2XD510.0A0A1S2XD51_CICAR; homeobox-leucine zipper protein ATHB-14
STRINGXP_004486450.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51763353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]