PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004486451.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

NF-YA

Protein Properties

Length: 206aa MW: 22763.1 Da PI: 7.3889

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004486451.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	102.7	3.5e-32	111	167	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++Il+RRq+Rak+e+ekk+ +++rkpylheSRh hAl+R+Rg+gGrF XP_004486451.1 111 EEPVFVNAKQYHGILRRRQSRAKAESEKKV-ARNRKPYLHESRHLHALKRARGCGGRF 167 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	5.4E-36	109	170	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	36.645	110	170	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	1.6E-27	112	167	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	3.2E-23	113	135	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	115	135	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	3.2E-23	144	167	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 206 aa Download sequence Send to blast
MTSSTHDPTD NEADGQQQSE ESQMQPISAN GISHAGIDTQ IVQYAAHPPL GTGHAMVPPA 60 YPYPDPYYRS IFAPYDAQPY PPQPYGGHPM ANLQLMGIQH AGVPLPTDAV EEPVFVNAKQ 120 YHGILRRRQS RAKAESEKKV ARNRKPYLHE SRHLHALKRA RGCGGRFLNS KKNENQQDEV 180 ASADNSQSNI NLNSDRNDLA PSDKTS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	5e-21	110	175	1	66	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004486451.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT146024	0.0	BT146024.1 Medicago truncatula clone JCVI-FLMt-11O7 unknown mRNA.
GenBank	JQ918271	0.0	JQ918271.1 Medicago truncatula nuclear transcription factor Y subunit A6 (NF-YA6) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004486451.1	1e-152	nuclear transcription factor Y subunit A-7 isoform X1
Refseq	XP_004486452.1	1e-152	nuclear transcription factor Y subunit A-7 isoform X1
Swissprot	Q84JP1	9e-66	NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBL	A0A1S2XAR6	1e-151	A0A1S2XAR6_CICAR; nuclear transcription factor Y subunit A-7 isoform X1
STRING	XP_004486451.1	1e-152	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5379	33	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.2	1e-51	nuclear factor Y, subunit A7

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]