PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004486570.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family HD-ZIP
Protein Properties Length: 690aa    MW: 78082.5 Da    PI: 6.3786
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004486570.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.21.6e-192578356
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    kR +++++q+ +L+e F+  + p++++r eLA++lgL+ +qVk+WFqNrR+k k
  XP_004486570.1 25 KRLRHSPNQILRLQETFNVLPRPDKKQRLELANELGLEPKQVKFWFQNRRIKIK 78
                    7999************************************************88 PP
2START113.62.8e-362074295206
                     HHHHHHHHHHHHC-TT-EEEE.......EXCCTTEEEEEEESSS...SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEEC CS
           START   5 eaaqelvkkalaeepgWvkss.......esengdevlqkfeeskv..dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevis 86 
                     +a +el+k+   +ep+Wvks         ++n++   ++++  ++   ++e +++s++v   + +l   +ld+  +W++ ++    k et++v++
  XP_004486570.1 207 AAKDELLKLLRTNEPFWVKSQvdrrlvlHQQNYENIFSRVDHFDGadVRIESSKDSRIVKFKALDLIDMFLDSE-KWTNLFPiivsKGETIKVLE 300
                     7889*********************99988888888888855444888***********************999.******************** PP

                     TT..........EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS
           START  87 sg..........galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehv 170
                     sg            + +m  e+ +lsplvp R+f+f+R++ q +a  wvi+dvS d  +++  +ss  R   +pSg++i++ s g s+v w+ehv
  XP_004486570.1 301 SGspknrngallLLILQMHGEMHVLSPLVPcREFYFLRFCAQVEANIWVIADVSYDYLKENGPHSSTWR---FPSGCIIHQISSGTSQVSWIEHV 392
                     ********99999999****************************************9988877999999...*********************** PP

                     E--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 171 dlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206
                     ++++++  h+++r +v+  +a+ga++w+  lqr +e+
  XP_004486570.1 393 EVGANVEvHSIYRDIVNGAIAFGASRWLMELQRMGER 429
                     *****977************************98875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.0E-181079IPR009057Homeodomain-like
SuperFamilySSF466894.23E-181983IPR009057Homeodomain-like
PROSITE profilePS5007116.9572080IPR001356Homeobox domain
SMARTSM003891.8E-162284IPR001356Homeobox domain
PfamPF000465.5E-172578IPR001356Homeobox domain
CDDcd000866.52E-162578No hitNo description
PRINTSPR000313.4E-55160IPR000047Helix-turn-helix motif
PROSITE patternPS0002705578IPR017970Homeobox, conserved site
PRINTSPR000313.4E-56076IPR000047Helix-turn-helix motif
SuperFamilySSF559612.88E-23194429No hitNo description
PROSITE profilePS5084837.296194432IPR002913START domain
CDDcd088751.04E-78199428No hitNo description
SMARTSM002347.5E-20203429IPR002913START domain
PfamPF018521.7E-29206428IPR002913START domain
SuperFamilySSF559613.71E-8449657No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 690 aa     Download sequence    Send to blast
MDLPTRDVSD DDDEQEMNQS SDTGKRLRHS PNQILRLQET FNVLPRPDKK QRLELANELG  60
LEPKQVKFWF QNRRIKIKSL HEKAVNSALR AENEKILNEI MEMKEAMKNI FCQSCKPNVE  120
HEQCLNRLRL ENALLKEKYE RLIKFVPIEK EKLSLELKKE PPTKTSPLGD FLKLGVSESG  180
SLNLIVGSSS KSSLEMETSR MLEVGIAAKD ELLKLLRTNE PFWVKSQVDR RLVLHQQNYE  240
NIFSRVDHFD GADVRIESSK DSRIVKFKAL DLIDMFLDSE KWTNLFPIIV SKGETIKVLE  300
SGSPKNRNGA LLLLILQMHG EMHVLSPLVP CREFYFLRFC AQVEANIWVI ADVSYDYLKE  360
NGPHSSTWRF PSGCIIHQIS SGTSQVSWIE HVEVGANVEV HSIYRDIVNG AIAFGASRWL  420
MELQRMGERL TRASLESIAS YDKGVITSPE GRRRVMQLAN EVVKDFSQIL AMSSKLDNIP  480
KYFIDADDSG VRFCLRNNTN SSIVIVASSI SLPIPSHIVF NFLKDPARRF QWDVICNGKP  540
WQEVAHISTG THPNNYVSII EPMEPRCEDS VVIMQECFIE PLGSYVVFSP VNVPQLKMFL  600
DGHDSSMVSL IPSGFFISEE SHSLLNDETT SSGSNGNGGV KTRGSLLTVA LQILMHGEIM  660
SLESVADASN TLITTTLNNI KRALLFDSQI
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004486570.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027187294.10.0homeobox-leucine zipper protein HDG11-like
TrEMBLA0A3Q7X0H30.0A0A3Q7X0H3_CICAR; homeobox-leucine zipper protein HDG11-like
STRINGXP_004486570.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10263398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.11e-135homeodomain GLABROUS 11