PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004486622.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

C2H2

Protein Properties

Length: 252aa MW: 28506.6 Da PI: 8.2107

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004486622.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.6	0.0002	89	111	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H XP_004486622.1 89 FSCNYCQRKFYSSQALGGHQNAH 111 89*****************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.51E-6	86	117	No hit	No description
PROSITE profile	PS50157	11.427	89	116	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	91	111	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009640	Biological Process	photomorphogenesis
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence Send to blast
MDLLRSEKYS SDNFNTSFSQ NPIPKPIENE EKKQQYPNFL LDLSLPKDSG DDESKQELNL 60 INCFDTDTSI SMNSSSESNH GNELEARIFS CNYCQRKFYS SQALGGHQNA HKRERSMAKR 120 RYKNGVDASV SLDFGNRYSS MASLPLHGSY NRSSSSLGIQ VHSSMINKPC FQAPFFGLSR 180 SSVQKQWQKQ SQSTIGNNID VEAETHESSR RLGKFCPTKV QEGFGGYWFG NSATHLKTKQ 240 EELQNLDLSL KL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004486622.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004486622.1	0.0	zinc finger protein 1-like
TrEMBL	A0A1S2XE94	0.0	A0A1S2XE94_CICAR; zinc finger protein 1-like
STRING	XP_004486622.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1439	31	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80730.1	6e-31	zinc-finger protein 1