PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004486757.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

bHLH

Protein Properties

Length: 338aa MW: 37212.3 Da PI: 6.7578

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004486757.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.9	0.00043	204	242	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L +l+ + +K + a++L +A+ YI+ Lq XP_004486757.1 204 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 242 6677889999999999998.....8******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.439	192	241	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.4E-7	202	252	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.26E-6	202	246	No hit	No description
SuperFamily	SSF47459	3.14E-10	202	253	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence Send to blast
MMAGNPNWWS MHPPPSLNIP SQYVLGSSSI PFNSLTENSE TPHSWSQLLF TGLPGEEERV 60 GFNHFEANKS SENWDVQIMN PCSRVSPNTI MDVIKQEVCQ SGNMYGEDQF HHHHHHHHAS 120 SSGLIGSSNW SHMVPVSSPI STSHVTSLSS SSDNMLDFTY NKVDHRNNNP LPTDQISECN 180 SSTIGVNKKA RVQPSSSQPP LKVRKEKLGD RITALHQLVS PFGKTDTASV LLEAIGYIRF 240 LQSQIEALSS PYLDTASKNM RNQHSVHVER NSVFPEDPGQ LLDDTGLKRK GAPNQNAEGN 300 KAKDLRSRGL CLVPVSCTQN VGSENGADYW APAFGSGF

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004486757.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT149545	0.0	BT149545.1 Medicago truncatula clone JCVI-FLMt-16P10 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004486757.1	0.0	transcription factor bHLH68-like isoform X1
Swissprot	Q8S3D1	7e-73	BH068_ARATH; Transcription factor bHLH68
TrEMBL	A0A1S2XEL9	0.0	A0A1S2XEL9_CICAR; transcription factor bHLH68-like isoform X1
STRING	XP_004486757.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1223	33	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29100.1	2e-73	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Le Hir R, et al. AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana. Physiol Plant, 2017. 160(3): p. 312-327 [PMID:28369972] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]