PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004486856.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB_related
Protein Properties Length: 293aa    MW: 32434.7 Da    PI: 9.8367
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004486856.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.41.1e-10556147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     +++WT+eE++ l ++v+++G g Wk I r          R+  ++k++w+++
   XP_004486856.1  5 KQKWTAEEEDALQRGVQKYGAGKWKNILRDPDfsrslAIRSNIDLKDKWRNL 56
                     79*******************************9999899**********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.166162IPR017930Myb domain
SuperFamilySSF466892.8E-15265IPR009057Homeodomain-like
SMARTSM007174.6E-6459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.8E-13556IPR009057Homeodomain-like
CDDcd116601.09E-19657No hitNo description
PfamPF139214.2E-8858No hitNo description
CDDcd000737.39E-11126190No hitNo description
SMARTSM005261.8E-16126193IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.101.3E-15126199IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.14E-15127205IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150422.294128198IPR005818Linker histone H1/H5, domain H15
PfamPF005381.0E-12129191IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MGNQKQKWTA EEEDALQRGV QKYGAGKWKN ILRDPDFSRS LAIRSNIDLK DKWRNLNVCP  60
GQSSKDKSRT PKIKPLVPAP ASPSLAPSPV PTLPNVTPSP QTQTQTQAPT QTPTPTPQPS  120
HNDDDAKTHP KYNAMIFEAL STIKDTNGSD LNAIVSFIEQ KHNFPQNQNF RRTLGTKLRR  180
LVSQGKLEKV QNCYKIKDTT VVTKSADDPK SPTAKEMDSP ASSGISKYDE AMKEAAETVA  240
YRIADAENKS FLAAAAVKET ERYAKFVEEN DVMLKFAEEL LAKCKLGGSV RFA
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004486856.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004486856.10.0telomere repeat-binding factor 4-like
TrEMBLA0A1S2XEV00.0A0A1S2XEV0_CICAR; telomere repeat-binding factor 4-like
STRINGXP_004486855.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32282958
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72740.22e-65MYB_related family protein