PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004486910.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

DBB

Protein Properties

Length: 246aa MW: 27542.6 Da PI: 4.2781

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004486910.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	20.1	1.3e-06	4	44	5	39
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 C+ +e+ ++ C ++ lC++C e H H++ XP_004486910.1 4 QCDVCEKAAATVICCADEAALCAKCDIEVHAAnklaskHQR 44 7****99*******************65667777765 PP
2	zf-B_box	30	1e-09	53	95	2	38
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 + ++C+ +++k++ +fC +++ l+C+dC + H+ H+ XP_004486910.1 53 KLPRCDICQDKPAFIFCVEDRALFCQDCDEPVHSAgslsanHQ 95 789***************************9996567777776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	9.257	1	47	IPR000315	B-box-type zinc finger
CDD	cd00021	5.74E-6	3	47	No hit	No description
SMART	SM00336	6.7E-9	4	47	IPR000315	B-box-type zinc finger
SMART	SM00336	2.0E-14	52	99	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	9.343	52	99	IPR000315	B-box-type zinc finger
Pfam	PF00643	6.6E-9	53	96	IPR000315	B-box-type zinc finger
CDD	cd00021	6.30E-8	55	98	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
MKIQCDVCEK AAATVICCAD EAALCAKCDI EVHAANKLAS KHQRLLLQSL SNKLPRCDIC 60 QDKPAFIFCV EDRALFCQDC DEPVHSAGSL SANHQRLLAT GIRVAMSSNC AEDDEQTHID 120 PPDRNTQQVS LETPSQQVPN FTSSWVVDDL LEFADFESSD KKESMQFGEM EWFTNESLFG 180 EEFTQEAMAA AEVPQVPQLS VTHASNNFSS QRTSKSHMSN KKPRIELKQD DYYDDEDEYF 240 TVPDLG

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as negative regulator of seedling photomorphogenesis (PubMed:18540109). BBX25/STH and BBX24/STO function as transcriptional corepressors of HY5 activity, leading to the down-regulation of BBX22 expression. BBX25/STH acts additively with BBX24/STO during de-etiolation and the hypocotyl shade avoidance response (PubMed:23624715). {ECO:0000269\|PubMed:18540109, ECO:0000269\|PubMed:23624715}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004486910.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004486910.1	0.0	B-box zinc finger protein 25
Swissprot	Q9SID1	3e-90	BBX25_ARATH; B-box zinc finger protein 25
TrEMBL	A0A1S2XBS0	0.0	A0A1S2XBS0_CICAR; B-box zinc finger protein 25
STRING	XP_004486910.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3438	31	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31380.1	7e-87	salt tolerance homologue

Publications ? help Back to Top
Gangappa SN,Holm M,Botto JF Molecular interactions of BBX24 and BBX25 with HYH, HY5 HOMOLOG, to modulate Arabidopsis seedling development. Plant Signal Behav, 2014. [PMID:23733077] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang X,Lin R Light signaling differentially regulates the expression of group IV of the B-box zinc finger family. Plant Signal Behav, 2017. 12(9): p. e1365213 [PMID:28922622]