PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004486914.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

FAR1

Protein Properties

Length: 255aa MW: 28963.5 Da PI: 6.0043

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004486914.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	92.6	5e-29	90	177	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA++vGF +r+sk ++s+r+g+++ r +vC+keg+r ++k++ k r+raetr+gC+a+++v+k ++g w +tk+++eH+H+l+p XP_004486914.1 90 FYNAYATRVGFIIRVSKLSRSRRDGSVIGRALVCNKEGFRMPDKRE--KIVRQRAETRVGCRAMIMVRKLNSGLWSITKFVKEHTHPLTP 177 ****************************************9988..9************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.6E-26	90	177	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MEFGIDDSSN GEAVGNAIMG EVSSSIADKE KMDCSSFEPT DEQDQDDNMT QDSSGVDQIP 60 SAIPAAPLVR SVDEPFIGQE FVSEAEAHAF YNAYATRVGF IIRVSKLSRS RRDGSVIGRA 120 LVCNKEGFRM PDKREKIVRQ RAETRVGCRA MIMVRKLNSG LWSITKFVKE HTHPLTPGRG 180 RRDFVYEQYP SGHDRVRELS QQLAIEKKRS ATYKTNLELL YEYIEEHNET VSKKIQHIVE 240 SVKEMEAKEQ EEKPR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004486914.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT143407	0.0	BT143407.1 Medicago truncatula clone JCVI-FLMt-16G7 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004486914.1	0.0	protein FAR1-RELATED SEQUENCE 3-like isoform X1
Refseq	XP_012570522.1	0.0	protein FAR1-RELATED SEQUENCE 3-like isoform X2
TrEMBL	A0A1S3E400	0.0	A0A1S3E400_CICAR; protein FAR1-RELATED SEQUENCE 3-like isoform X1
STRING	XP_004486914.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2453	30	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	4e-98	FAR1 family protein