PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004486917.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family FAR1
Protein Properties Length: 251aa    MW: 29173.6 Da    PI: 6.7412
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004486917.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR180.62.9e-2574164190
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr..traetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                     +fY++Y++++GF+vr++++++s+ n++++ + fvCskeg+r+++  +++++    + + tr gC+a++++ +++ gkw+vtk+++ H+H+l+
  XP_004486917.1  74 EFYHAYGRRIGFTVRIHHNRRSRVNNQVIGQAFVCSKEGFRAKKYVHRKDR-VlpPPPATREGCQAMIRLALRDGGKWVVTKFVKGHTHKLM 164
                     6******************************************99883333.2448899*******************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.7E-2274164IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MDHQSGQGFD SDGSDLDVLA EINDKHEKIE DEFSNNFESC TGEDEKFVEQ PVEDSDTLEP  60
FIGMQFNSRE EAREFYHAYG RRIGFTVRIH HNRRSRVNNQ VIGQAFVCSK EGFRAKKYVH  120
RKDRVLPPPP ATREGCQAMI RLALRDGGKW VVTKFVKGHT HKLMSPSEVP WRGSGKHLVS  180
EDEKDRRIRE LSLELYNERQ KCKRRCAAYE EQLNMILNDL EKHTEHISKK VADVVRSIRE  240
IEEEKSDSDG R
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004486917.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1465740.0AC146574.6 Medicago truncatula clone mth2-145j21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004486917.10.0protein FAR1-RELATED SEQUENCE 5
RefseqXP_004486918.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A1S2XEZ10.0A0A1S2XEZ1_CICAR; protein FAR1-RELATED SEQUENCE 5
STRINGXP_004486917.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF88613044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07500.11e-42FAR1 family protein