PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004486993.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family GRAS
Protein Properties Length: 1415aa    MW: 160351 Da    PI: 5.3355
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004486993.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3803e-1163787501373
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lL+ cA+ vs++d++ a++lL+++++++sp gd+ qRla+yf++A++ar+++  +++ +++ +s++   + ++ l+a+++f  ++P+ kf+h
  XP_004486993.1 378 LRTLLVLCAQGVSANDNRTANELLKQIRQHSSPLGDASQRLAHYFANAIEARMVGADTGT-QIFYMSHK-MLSAADYLKAYQVFISACPFKKFAH 470
                     5789**************************************************933333.33333333.34599******************** PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     + aN++I++ +e++e++HiiDf+i +G+QWp L++ L++R++gpp+lRiTg++ p++g   +e++eetg+rLak++e+++v+fe++++ ++++e+
  XP_004486993.1 471 FFANKMIMKTAEKAETLHIIDFGILYGFQWPILIKFLSKRDGGPPKLRITGIEYPQAGfrPAERIEETGRRLAKYCERFNVSFEYKAIPSRNWET 565
                     *********************************************************9*****************************9999**** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     +++e+L+++++E++aVn+ ++ ++llde+ +++s+++evLkl+k+++P ++v +  + ++n++ F++rf e+l +ysa+fd++++ ++r +e+r 
  XP_004486993.1 566 IQIENLNIRQNEVVAVNCLVRFKNLLDETIEVNSPKNEVLKLIKKINPSIFVQSIVNGSYNAPFFATRFRESLFHYSAIFDMYDTLISRSNEWRL 660
                     *********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                     ++Ere+lgrei+nvvaceg+er+er e +++W+ r ++aGF+++pl+++++++ +  lr+ + + +  +e+++++++gWk+r L++ ++W
  XP_004486993.1 661 MIEREFLGREIMNVVACEGFERVERPEAYKQWQVRNTRAGFRQLPLDKEIMTKFRDKLREWYHKDFVFDEDNNWMLQGWKGRILYASTCW 750
                     **************************************************************888************************* PP
2GRAS362.84.9e-111104714123373
            GRAS    3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95  
                      + L++cA+av+s d+++a++lL ++++++sp gd +qRla+yf+++L+ rla +++   + +p      ++  + l+a+klf+ ++P+ ++++
  XP_004486993.1 1047 TMLTQCAQAVASYDQRNANELLRQIRQHSSPFGDGLQRLAHYFANGLEIRLAAETP---SYMPLDV---STAGDMLKAYKLFVTACPLQRMTN 1133
                      579*************************************************9333...3333333...34789******************* PP

            GRAS   96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186 
                      +++ ++I   v++e  vH+iDf+i +G+QWp+L+++L++Rp+gpp+lRiTg++ p++g   +e++eetg+rL++++++++vpfe+n  +a+++
  XP_004486993.1 1134 VLTTKTIFSLVKNEASVHVIDFGICYGFQWPCLIKTLSARPGGPPKLRITGIELPQPGfrPAERVEETGRRLENYCKKFNVPFEYNC-LAQKW 1225
                      *********************************************************9*****************************.6**** PP

            GRAS  187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres 279 
                      e+++le+L+++++E ++V++ ++l++llde+v+++ +r++vLkl+++++P+++ +   + +++++ Fl+rf eal+++s+ fd +ea++pre+
  XP_004486993.1 1226 ETVRLEDLKIDRNEITVVSCLYRLKNLLDETVAVNCPREAVLKLIRKINPNIFFHGVVNGSYSAPFFLTRFREALYHFSSTFDVFEANVPRED 1318
                      ********************************************************************************************* PP

            GRAS  280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSa 372 
                       +r ++E+ l+gr++ nv+acegaer+er et+++W+ r ++aGFk+++l+ + +++ k+++++ + + + v+e+ +++++gWk+r L ++Sa
  XP_004486993.1 1319 TQRLMLEKGLFGRDAINVIACEGAERVERPETYKQWQVRNRRAGFKQLRLDPELVNDTKAMMKREYHKDFVVDEDGKWILQGWKGRVLNAFSA 1411
                      ****************************************************************99888************************ PP

            GRAS  373 W 373 
                      W
  XP_004486993.1 1412 W 1412
                      * PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098567.447352731IPR005202Transcription factor GRAS
PfamPF035141.0E-113378750IPR005202Transcription factor GRAS
PROSITE profilePS5098563.87710191393IPR005202Transcription factor GRAS
PfamPF035141.7E-10810471412IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 1415 aa     Download sequence    Send to blast
MDPNFVGIDN HGNLLLVSDP NSITDPYLYL PDVGPLDFDP SSNSLFNSYQ LVPSSSSSNV  60
NNTTTDHSFE DTDFSETVKY ISQILMEEDF EQKPCMCYDP LSLQHTEKFF FDALESNFPL  120
SPNQHPLDIL EIPDRNCSTT STTTDSGNSS SSNDLKPLSP DTPVSGTDFA FNSISHVKSQ  180
FIVPQHNNNN NNNISDGVLD LDSSETKILA QNIFSDADSM LQFRKGLEEA SKFLPKKTQL  240
FTGLENNTNS LVSQEGKGKV GVIKMEGGGL RGNSNSNSNN WSYSNLNSHG LLKSRKNHER  300
QGSDDEEGRS NKQSAVSVEE SEISEMFDRV LLSVENVPLC AEEKDGSVVE SSSTQHGELD  360
GGKARSKKQA RKRETIDLRT LLVLCAQGVS ANDNRTANEL LKQIRQHSSP LGDASQRLAH  420
YFANAIEARM VGADTGTQIF YMSHKMLSAA DYLKAYQVFI SACPFKKFAH FFANKMIMKT  480
AEKAETLHII DFGILYGFQW PILIKFLSKR DGGPPKLRIT GIEYPQAGFR PAERIEETGR  540
RLAKYCERFN VSFEYKAIPS RNWETIQIEN LNIRQNEVVA VNCLVRFKNL LDETIEVNSP  600
KNEVLKLIKK INPSIFVQSI VNGSYNAPFF ATRFRESLFH YSAIFDMYDT LISRSNEWRL  660
MIEREFLGRE IMNVVACEGF ERVERPEAYK QWQVRNTRAG FRQLPLDKEI MTKFRDKLRE  720
WYHKDFVFDE DNNWMLQGWK GRILYASTCW VPDFSFNMFS PNSFLHDFGD PNSLNPITNG  780
FELDDSSSPS SIISSNEESS SEVTRYSNHI LGFISDILMD EEDELERKPC MLQQCLRLQA  840
AEKSFYDVLV HNYPSSYDDS TDPDVNFGRT ASFESNSSSC TTDNSCESDS VNLVGEFDCS  900
SSQLQNSLLE EKNYYNVTEP DPVVIESQAA SASHFQNGTW NSIQPVMVVE EVSASVVPIS  960
REKRSHKMND DDTCNEQEGR GSKLSANFSD ELEPPEILDE VLLCQTGRTQ QHQPSSQNVD  1020
SGRKAAAKNS RSKRVLANNA AAVDLWTMLT QCAQAVASYD QRNANELLRQ IRQHSSPFGD  1080
GLQRLAHYFA NGLEIRLAAE TPSYMPLDVS TAGDMLKAYK LFVTACPLQR MTNVLTTKTI  1140
FSLVKNEASV HVIDFGICYG FQWPCLIKTL SARPGGPPKL RITGIELPQP GFRPAERVEE  1200
TGRRLENYCK KFNVPFEYNC LAQKWETVRL EDLKIDRNEI TVVSCLYRLK NLLDETVAVN  1260
CPREAVLKLI RKINPNIFFH GVVNGSYSAP FFLTRFREAL YHFSSTFDVF EANVPREDTQ  1320
RLMLEKGLFG RDAINVIACE GAERVERPET YKQWQVRNRR AGFKQLRLDP ELVNDTKAMM  1380
KREYHKDFVV DEDGKWILQG WKGRVLNAFS AWVPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-5236114141379Protein SCARECROW
5b3h_D1e-5236114141379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004486993.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004486993.10.0uncharacterized protein LOC101504630
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A1S2XC160.0A0A1S2XC16_CICAR; uncharacterized protein LOC101504630
STRINGXP_004486993.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]