PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004487036.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB
Protein Properties Length: 222aa    MW: 26092.1 Da    PI: 6.5222
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004487036.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.74.6e-17855148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +lv  v ++G ++W+ Ia+  g++Rt+k+c++rw +yl
   XP_004487036.1  8 KGPWTEEEDFKLVSFVGLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYL 55
                     79********************************************97 PP
2Myb_DNA-binding51.13.2e-1661106148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++++ E+ l +d+  ++G++ W++Iar+++ gRt++++k++w++++
   XP_004487036.1  61 RGKMSPHEERLVLDLQSKWGNR-WSRIARKLP-GRTDNEIKNYWRTHM 106
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.586355IPR017930Myb domain
SuperFamilySSF466894.12E-296102IPR009057Homeodomain-like
SMARTSM007173.3E-15757IPR001005SANT/Myb domain
PfamPF002491.1E-15855IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-20962IPR009057Homeodomain-like
CDDcd001671.16E-101055No hitNo description
PROSITE profilePS5129425.0156110IPR017930Myb domain
SMARTSM007172.3E-1560108IPR001005SANT/Myb domain
PfamPF002491.7E-1361105IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-2263109IPR009057Homeodomain-like
CDDcd001673.00E-1063106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MVQEEFRKGP WTEEEDFKLV SFVGLFGDRR WDFIAKVSGL NRTGKSCRLR WVNYLHPGLK  60
RGKMSPHEER LVLDLQSKWG NRWSRIARKL PGRTDNEIKN YWRTHMRKKA HEKKRGSIPS  120
TEHHSMDSHA SKKAGEESFY DTGGSKSSQV KIVGEEHEQE FSMDDIWKDI DISEENSLQQ  180
PEEVIIPPSS WEYNSSDSLW VMDEESMLFP MSDDPYFSRY AN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-2751101105MYB PROTO-ONCOGENE PROTEIN
1h88_C4e-27111051159MYB PROTO-ONCOGENE PROTEIN
1h89_C4e-27111051159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004487036.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0523771e-160BT052377.1 Medicago truncatula clone MTYFD_FE_FF_FG1G-L-19 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027189439.11e-162transcription factor MYB48-like
SwissprotQ9LX824e-84MYB48_ARATH; Transcription factor MYB48
TrEMBLA0A3Q7X7061e-161A0A3Q7X706_CICAR; transcription factor MYB48-like
STRINGXP_004487036.11e-164(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43783359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.12e-86myb domain protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  4. Imran QM, et al.
    Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
    Sci Rep, 2018. 8(1): p. 771
    [PMID:29335449]