PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004487133.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

NAC

Protein Properties

Length: 339aa MW: 38894.8 Da PI: 7.8612

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004487133.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	168.7	1.9e-52	13	139	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 ppGfrFhP+deel+v+yL+kk+++ +l++ ++i+e+d+yk++Pw+Lpkk +e+ewyfFs+rd+ky++g r+nrat sgyWkatg+d++++s+ XP_004487133.1 13 PPGFRFHPSDEELIVHYLQKKIKSLPLPA-SIIAEIDLYKYNPWELPKKSLFGEEEWYFFSPRDRKYPNGLRPNRATGSGYWKATGTDRPIISSc 106 9**************************.89***********8777899***********************************98 PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++++g+kk Lvfy+gr pkg ktdW+m+eyrl XP_004487133.1 107 GSKHIGVKKALVFYSGRPPKGAKTDWIMNEYRL 139 8899*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.05E-63	9	166	IPR003441	NAC domain
PROSITE profile	PS51005	60.413	12	166	IPR003441	NAC domain
Pfam	PF02365	2.0E-26	13	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence Send to blast
MEGKQKGSSY TFPPGFRFHP SDEELIVHYL QKKIKSLPLP ASIIAEIDLY KYNPWELPKK 60 SLFGEEEWYF FSPRDRKYPN GLRPNRATGS GYWKATGTDR PIISSCGSKH IGVKKALVFY 120 SGRPPKGAKT DWIMNEYRLI DTTTKSFMLK GSMRLDEWVL CRVRHKGYSS KNLSENQENP 180 CEPNIPVNLQ TSEEHPTNTK FRADMITDYQ YKDYQIIASI LVGGVIPPNE NMSSLSFKGS 240 KGNNLTSEYE EGSNKVNSQT AIPSLECYFN PLKRKSNEDD DQFENLISFT SKFNTENKID 300 KSFNKVLTNR ELNCYEIFNG STPNPSIDFQ ELNELNFAE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	8e-67	8	171	13	170	NO APICAL MERISTEM PROTEIN
1ut4_B	8e-67	8	171	13	170	NO APICAL MERISTEM PROTEIN
1ut7_A	8e-67	8	171	13	170	NO APICAL MERISTEM PROTEIN
1ut7_B	8e-67	8	171	13	170	NO APICAL MERISTEM PROTEIN
3swm_A	8e-67	8	171	16	173	NAC domain-containing protein 19
3swm_B	8e-67	8	171	16	173	NAC domain-containing protein 19
3swm_C	8e-67	8	171	16	173	NAC domain-containing protein 19
3swm_D	8e-67	8	171	16	173	NAC domain-containing protein 19
3swp_A	8e-67	8	171	16	173	NAC domain-containing protein 19
3swp_B	8e-67	8	171	16	173	NAC domain-containing protein 19
3swp_C	8e-67	8	171	16	173	NAC domain-containing protein 19
3swp_D	8e-67	8	171	16	173	NAC domain-containing protein 19
4dul_A	8e-67	8	171	13	170	NAC domain-containing protein 19
4dul_B	8e-67	8	171	13	170	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family associated with male fertility. Involved in anther development, but not in senescence. Reduced expression of NAC5 via RNAi leads to male-sterility. {ECO:0000269\|PubMed:22278768}.
UniProt	Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. Sequences of 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype. {ECO:0000269\|PubMed:17124321}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004487133.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, salt and cold treatments. {ECO:0000269\|PubMed:18813954}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC150891	4e-98	AC150891.3 Medicago truncatula chromosome 2 clone mth2-76a9, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004487133.1	0.0	NAC transcription factor NAM-B2
Swissprot	A0SPJ9	3e-78	NAM2_HORVV; NAC transcription factor NAM-2
Swissprot	Q8H4S4	5e-78	NAC10_ORYSJ; NAC domain-containing protein 10
TrEMBL	A0A1S2XCB0	0.0	A0A1S2XCB0_CICAR; NAC transcription factor NAM-B2
STRING	XP_004487133.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2416	29	81

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61110.1	2e-80	NAC domain containing protein 25

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Uauy C,Distelfeld A,Fahima T,Blechl A,Dubcovsky J A NAC Gene regulating senescence improves grain protein, zinc, and iron content in wheat. Science, 2006. 314(5803): p. 1298-301 [PMID:17124321]