PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004487362.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family GRAS
Protein Properties Length: 460aa    MW: 51982.6 Da    PI: 5.6401
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004487362.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS290.35.2e-89504442373
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalkl..fsevsPilk 92 
                     ++lLl+cA a++s+d++laq++++ l++ asp gd++qRl++ f++AL +r ++ +++   +++ + ++++n  + + ++a++l  ++++ P+++
  XP_004487362.1  50 EKLLLHCASALESNDTTLAQQVMWVLNNVASPLGDTNQRLTSWFLRALISRASKICPT---SMNFKGSTNNNiiQRRLMSATELagYVDLIPWHR 141
                     689**************************************************95554...4466666666643555556666699********* PP

            GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl... 181
                     f++ + N+ I ++++g +rvHi+Df+i+ ++QWp+++++La+R+egppslRiT+ +    +    + +++e+g+rL +fA+  +vpfefnv+   
  XP_004487362.1 142 FGFCASNNEIFKSIKGFKRVHILDFSITPCMQWPTFIDSLAKRQEGPPSLRITVPSFRPMVpplVNISIHEVGQRLGNFAKFKDVPFEFNVIgdt 236
                     *****************************************************9888555588999***************************** PP

            GRAS 182 .................vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadhnsesFlerfl 258
                                       ++ l+ l+++ L+++++Eal++n++  l +l d++ +++   rd++++lvk+l+P++v +v++++d++++s+  r++
  XP_004487362.1 237 isltneelsniestsfhFETMLSLLNPSVLNLREDEALIINCQNWLRYLSDDRKTQNIsIRDAFMNLVKGLNPRIVLLVDEDCDLSASSLTSRIT 331
                     **9999999888887755557788899999*******************99887777668*********************************** PP

            GRAS 259 ealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrvee 353
                      ++++ +  fd+l++ lp++s +r+  E   +g++i+n+++ eg++r+er et ++ ++r++++G+ +vp+ ++++ ++k ll +++  g+ ++ 
  XP_004487362.1 332 ACFNHLWIPFDALDTFLPKDSCQRTEFESD-IGQKIENIISFEGNQRIERLETGMQMSQRMKNVGYFSVPFCDETVVEVKELLDEHA-SGWGMKR 424
                     ******************************.********************************************************.88999** PP

            GRAS 354 esgslvlgWkdrpLvsvSaW 373
                     e++ lvl+Wk+++ v+++aW
  XP_004487362.1 425 EENMLVLTWKGNSCVFATAW 444
                     ******************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.04523426IPR005202Transcription factor GRAS
PfamPF035141.8E-8650444IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MHVHMKAELN GTSISFQNPT TIFNAHQTTP LPQPEALKGC LGSLDGACIE KLLLHCASAL  60
ESNDTTLAQQ VMWVLNNVAS PLGDTNQRLT SWFLRALISR ASKICPTSMN FKGSTNNNII  120
QRRLMSATEL AGYVDLIPWH RFGFCASNNE IFKSIKGFKR VHILDFSITP CMQWPTFIDS  180
LAKRQEGPPS LRITVPSFRP MVPPLVNISI HEVGQRLGNF AKFKDVPFEF NVIGDTISLT  240
NEELSNIEST SFHFETMLSL LNPSVLNLRE DEALIINCQN WLRYLSDDRK TQNISIRDAF  300
MNLVKGLNPR IVLLVDEDCD LSASSLTSRI TACFNHLWIP FDALDTFLPK DSCQRTEFES  360
DIGQKIENII SFEGNQRIER LETGMQMSQR MKNVGYFSVP FCDETVVEVK ELLDEHASGW  420
GMKREENMLV LTWKGNSCVF ATAWVPYEIR DCIVTDPSIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B1e-534344681474Protein SHORT-ROOT
5b3h_B3e-544344627420Protein SHORT-ROOT
5b3h_E3e-544344627420Protein SHORT-ROOT
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004487362.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1452180.0AC145218.29 Medicago truncatula clone mth2-34l18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004487362.10.0scarecrow-like protein 32
RefseqXP_004517262.10.0scarecrow-like protein 32
TrEMBLA0A1S2XFV00.0A0A1S2XFV0_CICAR; scarecrow-like protein 32
STRINGXP_004487362.10.0(Cicer arietinum)
STRINGXP_004517262.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100743142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-119GRAS family protein