PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004487368.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

bHLH

Protein Properties

Length: 236aa MW: 26535 Da PI: 6.3013

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004487368.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.3	8.6e-11	84	130	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + rE+ RRd++N++f eL ++l ++ + +K +K++ L A + I +L XP_004487368.1 84 KACREKLRRDKLNDRFLELSSVLEPD---KLPKTDKVTLLNDAARVITQL 130 678*********************...****************999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.83E-12	71	146	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	11.89	79	130	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.6E-8	83	130	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.93E-7	83	135	No hit	No description
SMART	SM00353	4.6E-7	85	136	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.5E-12	86	152	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
MDMDSSAGSS CWLYDYGFDI SVAASDFMAS DSTTAAFTWI PHTNITNPPS SNISLEMEYS 60 LDSTVLENAP SKRLKTESYA SGSKACREKL RRDKLNDRFL ELSSVLEPDK LPKTDKVTLL 120 NDAARVITQL RNEAERLKER NDELREKVKE LKAEKNELRD EKNKLKLDKE KLEQQVRSTT 180 VQQSSFLPNA LAAAKGQTGS HKLMPFIGYP GISMWQFMSP ATVDTSQDHL LRPPVA

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004487368.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT142086	1e-170	BT142086.1 Medicago truncatula clone JCVI-FLMt-5A23 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004487368.1	1e-175	transcription factor bHLH115-like isoform X1
Swissprot	Q9C682	3e-70	BH115_ARATH; Transcription factor bHLH115
TrEMBL	A0A1S2XFV5	1e-174	A0A1S2XFV5_CICAR; transcription factor bHLH115-like isoform X1
STRING	XP_004487368.1	1e-175	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14916	12	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51070.1	3e-53	bHLH family protein

Publications ? help Back to Top
Liang G,Zhang H,Li X,Ai Q,Yu D bHLH transcription factor bHLH115 regulates iron homeostasis in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(7): p. 1743-1755 [PMID:28369511]