PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004487635.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family bHLH
Protein Properties Length: 467aa    MW: 52068 Da    PI: 6.1894
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004487635.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.66.8e-063573951154
                     HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  XP_004487635.1 357 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 395
                     5778999**********998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.582346395IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.55E-7356399No hitNo description
SuperFamilySSF474592.09E-11356408IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0049357401IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-9360403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MADDDQFHHS SGNSNWWDTS RNNMRFDQSG TSQTSSSNNI VDFAWQNSDM VDIKPRSSSM  60
DDNSSIVFHD DTQKLQQPQD SSTTSIDPNL HMMGLGLSSH AMDWNQPPLI SEKGSSENNL  120
RSMLEENLSS TRNNFEQENM MGLCQGQIQW RSSSDQKLFS AVESSSNEFK QVNNRSFSLD  180
QNQFSPSYSS GESNVTSQGL MDYGTPSILQ GLLGSDHSNN IQHQQQQGSF ENRPMSFSYT  240
TNNYGLNSNN ELNIPSNWST KVPQFLRTNS PPKQQPPNNQ LHFTNNTPFW NASEAANSIK  300
DVRSSFFPSL QPQFSTPNFD SQAKNISEVG VVKKSGSEPA PKRTRNETPS TLPAFKVRKE  360
KMGDRITALQ QLVSPFGKTD TASVLSEAIE YIKFLHEQVT VLSTPYMKSG APTQNIQQNS  420
GKSKKSEGAK QDLRSRGLCL VPVSSTFPVT HETTVDFWTP TFGGTSR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004487635.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150392e-42AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004487635.10.0transcription factor bHLH123-like isoform X2
TrEMBLA0A1S2XDH90.0A0A1S2XDH9_CICAR; transcription factor bHLH123-like isoform X2
STRINGXP_004487634.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.11e-67bHLH family protein