PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004487637.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

bHLH

Protein Properties

Length: 447aa MW: 50284.1 Da PI: 6.1876

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004487637.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.7	6.4e-06	358	396	11	54
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L XP_004487637.1 358 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 396 5778999********998.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.582	347	396	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.96E-11	357	409	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.10E-7	357	400	No hit	No description
SMART	SM00353	0.0049	358	402	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.4E-9	361	404	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 447 aa Download sequence Send to blast
MADDDQFHHS SGNSNWWDTS RNNMRFDQSG TSQTSSSNNI VDFAWQNSDM VDIKPRSSSM 60 DDNSSIVFHD DTQKLQQPQD SSTTSIDPNL HMMGLGLSSH AMDWNQPPLI RSEKGSSENN 120 LRSMLEENLS STRNNFEQEN MMGLCQGQIQ WRSSSDQKLF SAVESSSNEF KQVNNRSFSL 180 DQNQFSPSYS SGESNVTSQG LMDYGTPSIL QGLLGSDHSN NIQHQQQQGS FENRPMSFSY 240 TTNNYGLNSN NELNIPSNWS TKVPQFLRTN SPPKQQPPNN QLHFTNNTPF WNASEAANSI 300 KDVRSSFFPS LQPQFSTPNF DSQAKNISEV GVVKKSGSEP APKRTRNETP STLPAFKVRK 360 EKMGDRITAL QQLVSPFGKT DTASVLSEAI EYIKFLHEQV TVLSTPYMKS GAPTQNIQQV 420 NPRNPRVQSK ILEAEGYAWC QFLVHFR

Sequence ? help Back to Top

Protein Sequence Length: 447 aa Download sequence Send to blast

MADDDQFHHS SGNSNWWDTS RNNMRFDQSG TSQTSSSNNI VDFAWQNSDM VDIKPRSSSM  60
DDNSSIVFHD DTQKLQQPQD SSTTSIDPNL HMMGLGLSSH AMDWNQPPLI RSEKGSSENN  120
LRSMLEENLS STRNNFEQEN MMGLCQGQIQ WRSSSDQKLF SAVESSSNEF KQVNNRSFSL  180
DQNQFSPSYS SGESNVTSQG LMDYGTPSIL QGLLGSDHSN NIQHQQQQGS FENRPMSFSY  240
TTNNYGLNSN NELNIPSNWS TKVPQFLRTN SPPKQQPPNN QLHFTNNTPF WNASEAANSI  300
KDVRSSFFPS LQPQFSTPNF DSQAKNISEV GVVKKSGSEP APKRTRNETP STLPAFKVRK  360
EKMGDRITAL QQLVSPFGKT DTASVLSEAI EYIKFLHEQV TVLSTPYMKS GAPTQNIQQV  420
NPRNPRVQSK ILEAEGYAWC QFLVHFR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004487637.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004487637.1	0.0	transcription factor bHLH123-like isoform X4
TrEMBL	A0A1S2XGE9	0.0	A0A1S2XGE9_CICAR; transcription factor bHLH123-like isoform X4
STRING	XP_004487634.1	0.0	(Cicer arietinum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20640.1	1e-41	bHLH family protein