PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004487679.1

Common Name

NAC4

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

NAC

Protein Properties

Length: 339aa MW: 38452.1 Da PI: 8.1805

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004487679.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	168	3e-52	14	139	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrF Ptdeel+v+yL++kv+g++++l ++i+e+d+yk++Pw Lp+k+ +ekewyfFs+rd+ky++g+r+nr++ sgyWkatg+dk +++ XP_004487679.1 14 LPPGFRFYPTDEELLVQYLCRKVAGHHFSL-QIIAEIDLYKFDPWVLPSKAIFGEKEWYFFSPRDRKYPNGTRPNRVAGSGYWKATGTDKIITN- 106 79*************************9.89***********7777799*******************************9999. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 +g++vg+kk Lvfy g+apkg+kt+W+mheyrl XP_004487679.1 107 EGRKVGIKKALVFYVGKAPKGTKTNWIMHEYRL 139 999**************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.59E-67	10	163	IPR003441	NAC domain
PROSITE profile	PS51005	60.269	14	162	IPR003441	NAC domain
Pfam	PF02365	4.0E-26	15	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009414	Biological Process	response to water deprivation
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence Send to blast
MGIQDKDPLS QLSLPPGFRF YPTDEELLVQ YLCRKVAGHH FSLQIIAEID LYKFDPWVLP 60 SKAIFGEKEW YFFSPRDRKY PNGTRPNRVA GSGYWKATGT DKIITNEGRK VGIKKALVFY 120 VGKAPKGTKT NWIMHEYRLL DSSRNNTGTK LDDWVLCRIY KKNSSAQKAI PNGIVSSREY 180 TQYSNDSSAS SSSHLDDVLQ SLPEIDDRCF MLPRVNSLRT MQHRQEEDKL NLLNLNNNNL 240 MDWSNPSSIL NTEFQEGQNN GMVNYSSCND LYVPSVSTIC HVNTSGTEKK PMEEEVQSGG 300 ARTNPGLFER GSNNFTYSNS VDSFGFRYPV QPVGFGFGQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-109	1	168	4	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-109	1	168	4	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-109	1	168	4	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-109	1	168	4	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-109	1	168	7	174	NAC domain-containing protein 19
3swm_B	1e-109	1	168	7	174	NAC domain-containing protein 19
3swm_C	1e-109	1	168	7	174	NAC domain-containing protein 19
3swm_D	1e-109	1	168	7	174	NAC domain-containing protein 19
3swp_A	1e-109	1	168	7	174	NAC domain-containing protein 19
3swp_B	1e-109	1	168	7	174	NAC domain-containing protein 19
3swp_C	1e-109	1	168	7	174	NAC domain-containing protein 19
3swp_D	1e-109	1	168	7	174	NAC domain-containing protein 19
4dul_A	1e-109	1	168	4	171	NAC domain-containing protein 19
4dul_B	1e-109	1	168	4	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates wounding-responsive genes (PubMed:28733419). Involved in jasmonate- and coronatine-mediated stomatal reopening in response to Pseudomonas syringae pv tomato DC3000 infection (PubMed:25005917). Regulates the expression of threonine deaminase 2 (TD2) through promoter binding (PubMed:28733419). {ECO:0000269\|PubMed:25005917, ECO:0000269\|PubMed:28733419}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00012	PBM	Transfer from AT1G52890	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004487679.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by jasmonate (JA) (PubMed:25005917, PubMed:28733419, PubMed:30610166). Induced by wounding (PubMed:28733419, PubMed:25005917). Induced by infection with the fungal pathogen Botrytis cinerea (PubMed:28733419). Induced by coronatine (PubMed:25005917). {ECO:0000269\|PubMed:25005917, ECO:0000269\|PubMed:28733419, ECO:0000269\|PubMed:30610166}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FJ477885	0.0	FJ477885.1 Cicer arietinum NAC family transcription factor 4 (NAC4) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001352183.1	0.0	NAC family transcription factor 4
Swissprot	A0A3Q7HH64	1e-130	JA2L_SOLLC; NAC domain-containing protein JA2L
TrEMBL	A0A3Q7K8A1	0.0	A0A3Q7K8A1_CICAR; NAC family transcription factor 4
STRING	XP_004487680.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4429	33	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52890.1	1e-123	NAC domain containing protein 19

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Du M, et al. MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato. Plant Cell, 2017. 29(8): p. 1883-1906 [PMID:28733419] Liu Y, et al. MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop. Plant Cell, 2019. 31(1): p. 106-127 [PMID:30610166]