PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004487998.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family bHLH
Protein Properties Length: 249aa    MW: 28349.2 Da    PI: 4.8422
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004487998.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.92.1e-145598755
                    HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                      Er+RR+++N++++ Lr+++P+ +      K++Ka+i + A+eYI++L+
  XP_004487998.1 55 VSERNRRKKLNERLFALRSVVPNiS------KMDKASIIKDAIEYIQHLH 98
                    67*********************66......*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.5454897IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.14E-1850114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.94E-1351102No hitNo description
SMARTSM003538.2E-1654103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-1754113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.0E-125597IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MENIGEEYKH YWETNMFLQT QELDSWGLDE AFSGYYDSSS PDGAASSAVS SKNIVSERNR  60
RKKLNERLFA LRSVVPNISK MDKASIIKDA IEYIQHLHEQ EKIIQAEIME LESGMPNNNN  120
NNNINPSNDF DQELPILLRS KKKRTDQLYD CVTSTSFPIE VLELRVTYMG ENTIVVSLTC  180
SKRTDTMVKL CEVFESLKLK IITANITSFS GRLLKTVFIE ANEEEKDLLQ IKIRTAIAAL  240
NDPLSPVSI
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004487998.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1396081e-138BT139608.1 Medicago truncatula clone JCVI-FLMt-13I5 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004487998.10.0transcription factor bHLH35 isoform X2
SwissprotQ2HIV97e-94BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A1S2XE980.0A0A1S2XE98_CICAR; transcription factor bHLH35 isoform X2
STRINGXP_004487998.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.12e-86bHLH family protein