PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004488070.2
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family HD-ZIP
Protein Properties Length: 209aa    MW: 24066.2 Da    PI: 8.6288
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004488070.2genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.93.4e-1872124456
                     -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     + ++tkeq + Le++F+ ++++++++++ LA++l+L+ rqV vWFqNrRa+ k
  XP_004488070.2  72 KLRLTKEQSDMLEDAFKLHNTINTAQKRALAEQLNLKHRQVEVWFQNRRARTK 124
                     5679***********************************************98 PP
2HD-ZIP_I/II108.74.2e-3571158290
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                     kk+rl+keq+ +LE+ F+ ++++++ +K +la++L+l+ rqv+vWFqnrRARtk+kq+E+++ +Lk+++d+l+een rL+ke eeLr +
  XP_004488070.2  71 KKLRLTKEQSDMLEDAFKLHNTINTAQKRALAEQLNLKHRQVEVWFQNRRARTKLKQTEVNCIFLKKCHDKLNEENLRLKKELEELR-A 158
                     9*************************************************************************************9.4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.27E-1858127IPR009057Homeodomain-like
PROSITE profilePS5007116.22866126IPR001356Homeobox domain
SMARTSM003891.4E-1368130IPR001356Homeobox domain
CDDcd000867.75E-1371127No hitNo description
Gene3DG3DSA:1.10.10.601.5E-1771124IPR009057Homeodomain-like
PfamPF000461.5E-1572124IPR001356Homeobox domain
PROSITE patternPS000270101124IPR017970Homeobox, conserved site
SMARTSM003406.4E-16126169IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MLDLNLQLGL GSYVQNKVNK PLVNSKEELA FDLNQDDKAN ELSLKRVHEE HPNDSNEEIT  60
ISTNDKNGGA KKLRLTKEQS DMLEDAFKLH NTINTAQKRA LAEQLNLKHR QVEVWFQNRR  120
ARTKLKQTEV NCIFLKKCHD KLNEENLRLK KELEELRALK IGPSYTSQSS KAANWTICSS  180
CKKIWKPNEG HNNEEDGVRK SSQSTIELD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1118126RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004488070.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004488070.31e-152homeobox-leucine zipper protein HAT2-like
SwissprotA2XE764e-44HOX19_ORYSI; Homeobox-leucine zipper protein HOX19
SwissprotQ8GRL44e-44HOX19_ORYSJ; Homeobox-leucine zipper protein HOX19
TrEMBLA0A1S2XGL51e-151A0A1S2XGL5_CICAR; homeobox-leucine zipper protein HAT2-like
STRINGXP_004488070.11e-151(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56642851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17460.13e-35Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein