PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004488253.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family NF-YB
Protein Properties Length: 130aa    MW: 14774.6 Da    PI: 6.2628
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004488253.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB173.22.7e-5419114297
           NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 
                     +eqdr+lPianv+rimk++lP+nakisk++ket+qecvsefisfvtseas+kc++e+rkt+ngdd++walatlGf+dy+ep++ yl++yrele +
  XP_004488253.1  19 KEQDRLLPIANVGRIMKHILPQNAKISKESKETMQECVSEFISFVTSEASEKCRKERRKTVNGDDICWALATLGFDDYAEPMRRYLHRYRELEVD 113
                     89******************************************************************************************988 PP

           NF-YB  97 k 97 
                     k
  XP_004488253.1 114 K 114
                     6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.1E-5013120IPR009072Histone-fold
SuperFamilySSF471139.03E-3821117IPR009072Histone-fold
PfamPF008086.0E-272488IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006157.7E-195270No hitNo description
PROSITE patternPS0068505571IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006157.7E-197189No hitNo description
PRINTSPR006157.7E-1990108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MVDNIGGSSS NDNGDFVIKE QDRLLPIANV GRIMKHILPQ NAKISKESKE TMQECVSEFI  60
SFVTSEASEK CRKERRKTVN GDDICWALAT LGFDDYAEPM RRYLHRYREL EVDKINSNNQ  120
EIRGGNGPHA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B3e-4518109192Transcription factor HapC (Eurofung)
4g92_B3e-4518109192Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004488253.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ9182911e-123JQ918291.1 Medicago truncatula nuclear transcription factor Y subunit B18 (NF-YB18) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004488253.12e-94nuclear transcription factor Y subunit B-5-like
SwissprotO822485e-56NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLA0A1S2XET75e-93A0A1S2XET7_CICAR; nuclear transcription factor Y subunit B-5-like
STRINGXP_004488253.19e-94(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80532131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.12e-58nuclear factor Y, subunit B5
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]