PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004488298.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

M-type_MADS

Protein Properties

Length: 187aa MW: 21647.7 Da PI: 8.0835

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004488298.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	22.2	1.8e-07	9	37	1	29
S---SHHHHHHHHHHHHHHHHHHHHHHHH CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSv 29 kri+n+ r++tf R++g+ KK E S XP_004488298.1 9 KRIQNEKARKTTFVHRKKGLSKKVLEFSS 37 79**********************99985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	12.895	1	42	IPR002100	Transcription factor, MADS-box
SMART	SM00432	0.0066	1	48	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.15E-9	1	42	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.4E-7	10	42	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 187 aa Download sequence Send to blast
MGHAKTNMKR IQNEKARKTT FVHRKKGLSK KVLEFSSIFG AEHQKIKTTI EEFGVKDYYA 60 NKKNLVEAQI SRVRKEILKK KYPTSSPIFH NSEEKQLKAF SAFIDSKIET NQLSKLVDWD 120 DMKVESEEFT SFIQNTMQNI TYDNVLSSHL GQLDVNHNIS QMQNITGCML PLYDDICDFV 180 DCTDLID

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004488298.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004488298.1	1e-138	uncharacterized protein LOC101513970
TrEMBL	A0A1S2XH36	1e-137	A0A1S2XH36_CICAR; uncharacterized protein LOC101513970
STRING	XP_004488298.1	1e-137	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF534	31	111