PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004488351.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family NF-YB
Protein Properties Length: 156aa    MW: 17396.7 Da    PI: 4.3361
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004488351.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB78.41e-241195387
           NF-YB  3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvyl 87
                    ++d+ lP a +++i+k++lP + ++++d+++++ ec +efi +v+se+++ c+re+r+ti+++ +l al+ lGf +y+e++ +  
  XP_004488351.1 11 KEDASLPKATMTKIIKEMLPPDVRVARDTQDLLIECCVEFINLVSSESNEVCNREERRTIAPEHVLKALGVLGFGEYIEEVYAAY 95
                    6899***************************************************************************986543 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.104.7E-388140IPR009072Histone-fold
SuperFamilySSF471139.22E-3512143IPR009072Histone-fold
PfamPF008086.7E-211479IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MEPMDIVAKS KEDASLPKAT MTKIIKEMLP PDVRVARDTQ DLLIECCVEF INLVSSESNE  60
VCNREERRTI APEHVLKALG VLGFGEYIEE VYAAYEQHKM ETVQDSIKGA KWSGGAEMTE  120
EQALAEQQRM FAEARARMNG GTITSNQPDA DQSLES
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_B1e-321213512133Transcription Regulator NC2 beta chain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004488351.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ9182740.0JQ918274.1 Medicago truncatula nuclear trancription factor Y subunit B1 (NF-YB1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004488351.11e-113protein Dr1 homolog isoform X1
SwissprotP495924e-89NC2B_ARATH; Protein Dr1 homolog
TrEMBLA0A1S2XH571e-112A0A1S2XH57_CICAR; protein Dr1 homolog isoform X1
STRINGXP_004488351.11e-113(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47663358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23090.22e-91nuclear factor Y, subunit B13
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]