PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004488431.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family SBP
Protein Properties Length: 559aa    MW: 61041.5 Da    PI: 6.7857
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004488431.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP134.82.7e-42181256277
                     -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
             SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                     Cqv gC++dls +k+yh+rhkvCevhsk+++v+v+g+eqrfCqqCsrfh l efD++krsCr+rLa+hnerrrk+q
  XP_004488431.1 181 CQVYGCNKDLSGCKDYHKRHKVCEVHSKTSKVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQ 256
                     **************************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.105.9E-33175242IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.445178255IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.55E-39180259IPR004333Transcription factor, SBP-box
PfamPF031102.7E-31181254IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 559 aa     Download sequence    Send to blast
MDSWSFVPEE KGYVSNDTLS ASNTLGRTKG SFLSWDLKTP SSFLGQQSIE NDNNHNQGFE  60
ELGFHGMLGK QLSNVDVDDD DDVVVGNVHS RKMNSDVVMA APIPNAFSVR ENHFNSKISN  120
TLGDTNGCNS LIDLKLGRFG DHGDAIGSTF SKGTNILSSS GSSTPPKRVR SSGVHSQISY  180
CQVYGCNKDL SGCKDYHKRH KVCEVHSKTS KVIVNGIEQR FCQQCSRFHL LAEFDDGKRS  240
CRKRLAGHNE RRRKPQVGIH SGRSGRLLQP YGDSRFQGTM LTSASFICQE ILPGEVLSSE  300
KCAASNWWRP IKAEDGTGFR PFSSIPVSNG HPHSRTLFPS YSDKQFPFLH ENGATSATES  360
IFCENNSQYP PILGGSNSGS QSLFQNTSLG SEDFNVFETE STVQGLSGVS DGGCALSLLS  420
SQSQNSSSQS SGIPMSRHLV IPTSHSHYGM SPVSEKMIGM SSHASSGVSD RFPSELNHND  480
GSHLSPILIS GNNELVHFEM ADGIFHGSDF VNVKDRLSCE DGPTIDLLQL SSQLQRVEHQ  540
RQALQVKQEN DSSCSLRIT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-29178254884squamosa promoter binding protein-like 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004488431.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004488431.10.0teosinte glume architecture 1-like
TrEMBLA0A1S2XI020.0A0A1S2XI02_CICAR; teosinte glume architecture 1-like
STRINGXP_004488431.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18193493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69170.12e-51SBP family protein