PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004488736.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family SBP
Protein Properties Length: 181aa    MW: 21097.5 Da    PI: 8.4209
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004488736.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP130.46.2e-4165139276
                     -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
             SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 
                     Cq+e+C+ad++  k+yhrrhkvCevhskap+v+v+gl+qrfCqqCsrfhel efDe+krsCrrrLa+hnerrrk+
  XP_004488736.1  65 CQAESCDADFTLSKRYHRRHKVCEVHSKAPSVVVAGLRQRFCQQCSRFHELMEFDEAKRSCRRRLARHNERRRKS 139
                     *************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.8E-3360126IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.87262139IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.22E-3763142IPR004333Transcription factor, SBP-box
PfamPF031104.1E-3165138IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MHIIIHARST MERNQTSLKK DNIVEHEEEE DEEDESHEEN EKKKSACVNG KKRPSKSGRF  60
SPPFCQAESC DADFTLSKRY HRRHKVCEVH SKAPSVVVAG LRQRFCQQCS RFHELMEFDE  120
AKRSCRRRLA RHNERRRKSP SGICNEGSSS GIKGQQDRDG DWNKIEMDMS RSSSHEFLNF  180
S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-3457138384squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004488736.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0104069e-36AP010406.1 Lotus japonicus genomic DNA, chromosome 3, clone: LjT41F22, TM1776b, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004488736.11e-131squamosa promoter-binding-like protein 3 isoform X1
SwissprotQ387415e-38SBP1_ANTMA; Squamosa promoter-binding protein 1
TrEMBLA0A1S2XHV91e-130A0A1S2XHV9_CICAR; squamosa promoter-binding-like protein 3 isoform X1
STRINGXP_004488736.11e-131(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53534153
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53160.24e-29squamosa promoter binding protein-like 4
Publications ? help Back to Top
  1. Klein J,Saedler H,Huijser P
    A new family of DNA binding proteins includes putative transcriptional regulators of the Antirrhinum majus floral meristem identity gene SQUAMOSA.
    Mol. Gen. Genet., 1996. 250(1): p. 7-16
    [PMID:8569690]