PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004489298.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family HD-ZIP
Protein Properties Length: 286aa    MW: 32737.3 Da    PI: 4.4691
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004489298.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.91.1e-2069122356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k++++t+eq++ Le+ Fe+++++  e++++LAkklgL+ rqV vWFqNrRa++k
  XP_004489298.1  69 KKRRLTSEQVHLLEKSFEEENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWK 122
                     56789************************************************9 PP
2HD-ZIP_I/II135.12.5e-4368159192
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                     ekkrrl++eqv+lLE+sFeee+kLeperK++la++LglqprqvavWFqnrRAR+ktkqlE+dy++Lk++yd+l +  +++ ke+e+L++e+ 
  XP_004489298.1  68 EKKRRLTSEQVHLLEKSFEEENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDVLKSSYDSLLSTYDSIVKENEKLKSEVV 159
                     69**************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.78E-2058126IPR009057Homeodomain-like
PROSITE profilePS5007118.59364124IPR001356Homeobox domain
SMARTSM003894.4E-2067128IPR001356Homeobox domain
CDDcd000862.47E-1969125No hitNo description
PfamPF000465.9E-1869122IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.6E-2270131IPR009057Homeodomain-like
PRINTSPR000314.3E-695104IPR000047Helix-turn-helix motif
PROSITE patternPS00027099122IPR017970Homeobox, conserved site
PRINTSPR000314.3E-6104120IPR000047Helix-turn-helix motif
PfamPF021831.2E-18124166IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001558Biological Processregulation of cell growth
GO:0009637Biological Processresponse to blue light
GO:0009651Biological Processresponse to salt stress
GO:0009965Biological Processleaf morphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MESGRLYFDT TSVCRGNNSM NMLYLGNADL SFRGRSMMSM EEGSKRRPFF SSPDELYDEE  60
YYEEQSPEKK RRLTSEQVHL LEKSFEEENK LEPERKTQLA KKLGLQPRQV AVWFQNRRAR  120
WKTKQLERDY DVLKSSYDSL LSTYDSIVKE NEKLKSEVVS LNEKLQVQAK EMLGEPLLDK  180
EANPLPIEIA QIFSIKVDDH MSAGSVGSAV VDEGSPHVVV DSVDSYFPAD NYGGCVAPIE  240
RVQSEEDDGS DDGRSYFNVF VASETEQQNH GEGEALNWWG NMYYVA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1116124RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00323DAPTransfer from AT3G01470Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004489298.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004489298.20.0LOW QUALITY PROTEIN: homeobox-leucine zipper protein HAT5
SwissprotQ022833e-93HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBLA0A1S2XIY60.0A0A1S2XIY6_CICAR; LOW QUALITY PROTEIN: homeobox-leucine zipper protein HAT5
STRINGXP_004489298.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112833039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.12e-84homeobox 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Arce AL,Chan RL
    A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype.
    Plant Physiol., 2017. 175(3): p. 1238-1253
    [PMID:28956754]