PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004489383.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family bHLH
Protein Properties Length: 92aa    MW: 10609.9 Da    PI: 9.3627
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004489383.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.91.6e-0724582054
                    HHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH 20 feeLrellPk.askapskKlsKaeiLekAveYIksL 54
                     ++Lr+l+P+ + + +s K+s + +L+++++YI+ L
  XP_004489383.1 24 VSKLRQLVPEiR-HRRSDKVSASKVLQETCNYIRTL 58
                    589*******77.89*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.226458IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.7E-81974IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.05E-82078IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.1E-52458IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
MSSRRSRQQS SSSRISDEQI IELVSKLRQL VPEIRHRRSD KVSASKVLQE TCNYIRTLNR  60
EVDDLSERLS QLLTTIDADS PEANIIRSLI NQ
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004489383.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004489383.12e-57transcription factor PRE1
SwissprotQ9LJX12e-40PRE5_ARATH; Transcription factor PRE5
TrEMBLA0A1S2XHD05e-56A0A1S2XHD0_CICAR; transcription factor PRE1
STRINGXP_004489383.18e-57(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56734143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39860.12e-36bHLH family protein