PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004489415.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB
Protein Properties Length: 250aa    MW: 28965.1 Da    PI: 8.208
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004489415.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.31.1e-151259148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W + Edell  +v+q+G g W++++ + g++R++k+c++rw++yl
   XP_004489415.1 12 KGAWNKMEDELLTTCVQQYGEGKWHLVPIRTGLNRCRKSCRLRWLNYL 59
                     79********************************************97 PP
2Myb_DNA-binding46.58.7e-1565109147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg +T++E +  ++++++lG++ W++Ia +++ gRt++++k++w+++
   XP_004489415.1  65 RGEFTEDEVDMMKRLHRLLGNR-WSLIAGRLP-GRTPNDVKNYWNTH 109
                      899*******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.954759IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.0E-191062IPR009057Homeodomain-like
SuperFamilySSF466894.77E-2611106IPR009057Homeodomain-like
SMARTSM007171.8E-131161IPR001005SANT/Myb domain
PfamPF002491.0E-131259IPR001005SANT/Myb domain
CDDcd001675.46E-91459No hitNo description
PROSITE profilePS5129424.1960114IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.8E-2363114IPR009057Homeodomain-like
SMARTSM007172.3E-1464112IPR001005SANT/Myb domain
PfamPF002493.6E-1365109IPR001005SANT/Myb domain
CDDcd001677.67E-1067110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MEGEGSLSFV RKGAWNKMED ELLTTCVQQY GEGKWHLVPI RTGLNRCRKS CRLRWLNYLK  60
PSIKRGEFTE DEVDMMKRLH RLLGNRWSLI AGRLPGRTPN DVKNYWNTHI HKKVSSSHKE  120
EYSTCAKSKK EIIKPHLVIK PQPRNFSTTN STMLKMRFLN EDQSGAKNSQ ACDDTLITKY  180
NDNNLDDKWW VGSTMMDDDK GCNVGVNNDL CCVQDGMLMK DLKLNDEIIK GLLEDQSWSD  240
FLIDINFLDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-23121167110B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004489415.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004489415.10.0transcription factor MYB90-like isoform X2
SwissprotQ9FNV93e-57MY113_ARATH; Transcription factor MYB113
TrEMBLA0A1S2XJ750.0A0A1S2XJ75_CICAR; transcription factor MYB90-like isoform X2
STRINGXP_004489414.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.11e-59myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]