PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004489665.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family WOX
Protein Properties Length: 287aa    MW: 31023 Da    PI: 6.5217
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004489665.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox50.14.6e-163191257
                    T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    r+R+t+++eq+ +Le+ F++   +p ++e  ++ k l    ++ +++V++WFqNrR + ++
  XP_004489665.1 31 RSRWTPKPEQILILESIFNSgMVNPPKDETVRIRKLLekfgNVGDANVFYWFQNRRSRSRR 91
                    89*****************99*************************************997 PP
2Wus_type_Homeobox107.48.6e-353093265
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                       +r+RWtP+peQi iLe++++sG+++P+k+e+ ri++ Le++G+++d+NVfyWFQNr++R+r++q
     XP_004489665.1 30 VRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGNVGDANVFYWFQNRRSRSRRRQ 93
                       689***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.56E-142699IPR009057Homeodomain-like
PROSITE profilePS5007111.4672792IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.3E-92799IPR009057Homeodomain-like
SMARTSM003891.4E-62996IPR001356Homeobox domain
CDDcd000860.007173186No hitNo description
PfamPF000468.8E-143191IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009734Biological Processauxin-activated signaling pathway
GO:0048830Biological Processadventitious root development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MEDQQQQQQN VQSQISNTNN PNTEKSESTV RSRWTPKPEQ ILILESIFNS GMVNPPKDET  60
VRIRKLLEKF GNVGDANVFY WFQNRRSRSR RRQRQMQAAA QISSSGANPY HQYQSSSNTN  120
SISPSVGASA IGFGGSSFTM NSSSSNSSYN NNNFSGSSSS CGVGVGAGVA EEGFGGLFLG  180
SSQINFPEID QTSSAASSAL FPSDQASNFN YHSGFGGSNI SGLITVFING VATEVPRGII  240
DIKTMFGEDV MLVHSSGVSV PTNEFGFLMQ SLQHGESYFL VSKQNQV
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00330DAPTransfer from AT3G03660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004489665.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150442e-53AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004489665.10.0WUSCHEL-related homeobox 11-like
SwissprotQ6X7J32e-71WOX11_ARATH; WUSCHEL-related homeobox 11
TrEMBLA0A1S2XI160.0A0A1S2XI16_CICAR; WUSCHEL-related homeobox 11-like
STRINGXP_004489665.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58983152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03660.13e-31WUSCHEL related homeobox 11
Publications ? help Back to Top
  1. Hu X,Xu L
    Transcription Factors WOX11/12 Directly Activate WOX5/7 to Promote Root Primordia Initiation and Organogenesis.
    Plant Physiol., 2016. 172(4): p. 2363-2373
    [PMID:27784768]
  2. Sheng L, et al.
    Non-canonical WOX11-mediated root branching contributes to plasticity in Arabidopsis root system architecture.
    Development, 2017. 144(17): p. 3126-3133
    [PMID:28743799]
  3. Liu J, et al.
    The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture.
    Plant Cell Physiol., 2018. 59(4): p. 734-743
    [PMID:29361138]
  4. Baesso B, et al.
    Transcription factors PRE3 and WOX11 are involved in the formation of new lateral roots from secondary growth taproot in A. thaliana.
    Plant Biol (Stuttg), 2018. 20(3): p. 426-432
    [PMID:29450949]