PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004489767.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family ZF-HD
Protein Properties Length: 259aa    MW: 28514.8 Da    PI: 7.4208
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004489767.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer102.82.3e-3262117359
     ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                     k rY+eClkNhA+ +Ggh++DGCgEfmp+ g+egt ++lkCaAC+CHRnFHR+e++ 
  XP_004489767.1  62 KPRYRECLKNHAVGIGGHSLDGCGEFMPA-GNEGTLESLKCAACNCHRNFHRKETDP 117
                     579*************************9.999********************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257742.0E-2164116IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.0E-3064114IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.9E-2964115IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.17265114IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.601.0E-30183258IPR009057Homeodomain-like
SuperFamilySSF466899.73E-19184257IPR009057Homeodomain-like
TIGRFAMsTIGR015651.1E-25196252IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MEFEDQEEQE EELCMGGASY DSLPNSSRVK MPGGSEPIMV THPLRNINSN NGNINIGVGN  60
GKPRYRECLK NHAVGIGGHS LDGCGEFMPA GNEGTLESLK CAACNCHRNF HRKETDPTAG  120
GDPYFLTHHQ HHPPPPPQFA AYYRTPTGYL HLPGNQRMGT LALPSTSGGG GDGGTQSPRE  180
DQEDVTNPPS GGGSSKKRHR TKFTQEQKDK MLELAEKLGW RIQKHDEGLV QEFCNESGVK  240
RHVLKVWMHN NKHTLGKKP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A5e-241962541775ZF-HD homeobox family protein
1wh7_A5e-241952541675ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004489767.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004489767.10.0zinc-finger homeodomain protein 1-like
SwissprotA2Z2591e-73ZHD1_ORYSI; Zinc-finger homeodomain protein 1
SwissprotQ6YXH51e-73ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBLA0A1S2XJX60.0A0A1S2XJX6_CICAR; zinc-finger homeodomain protein 1-like
STRINGXP_004489767.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.13e-66homeobox protein 22
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]