PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004489944.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

MYB_related

Protein Properties

Length: 255aa MW: 28337.6 Da PI: 10.5595

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004489944.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.3	4.8e-15	91	135	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + ++lG+g+W+ I+r + k+Rt+ q+ s+ qky XP_004489944.1 91 AWTEEEHKLFLLGLQKLGKGDWRGISRNFVKTRTPTQIASHAQKY 135 7*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.60.10	6.6E-4	5	23	IPR001878	Zinc finger, CCHC-type
PROSITE profile	PS50158	8.614	7	20	IPR001878	Zinc finger, CCHC-type
PROSITE profile	PS51294	15.955	83	140	IPR017930	Myb domain
SuperFamily	SSF46689	7.48E-17	86	139	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.5E-17	87	138	IPR006447	Myb domain, plants
SMART	SM00717	3.5E-10	88	138	IPR001005	SANT/Myb domain
CDD	cd00167	6.20E-10	91	136	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.5E-11	91	135	IPR009057	Homeodomain-like
Pfam	PF00249	3.4E-12	91	135	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MSQSRTCSQC GNNGHNSRTC NNKEKIIKIF GVPVIRANND NNSFRRSASL NNLTQYEQLP 60 PQQSNVVDVG YISDNVVHAS GRAPERKRAV AWTEEEHKLF LLGLQKLGKG DWRGISRNFV 120 KTRTPTQIAS HAQKYFLRRH NQNRRRRRSS LFDITTDTVM KSLTITEGEH SEQETVMSPP 180 PPTPNAYTPS HYGGIPRITP TLPPSSKMST LNLNEKASSS IEPQPLSLKL QPSSLSKDNS 240 PENSGHSISS SSSSA

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269\|PubMed:12172034, ECO:0000269\|PubMed:20130099}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004489944.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269\|PubMed:12172034, ECO:0000269\|PubMed:20130099}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004489944.1	0.0	transcription factor MYB1R1 isoform X2
Swissprot	Q7XC57	1e-52	MYBS3_ORYSJ; Transcription factor MYBS3
TrEMBL	A0A1S2XIP0	0.0	A0A1S2XIP0_CICAR; transcription factor MYB1R1 isoform X2
STRING	XP_004489944.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5338	33	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G70000.2	1e-54	MYB_related family protein

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992] Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Su CF, et al. A novel MYBS3-dependent pathway confers cold tolerance in rice. Plant Physiol., 2010. 153(1): p. 145-58 [PMID:20130099]