PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004490019.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

HD-ZIP

Protein Properties

Length: 278aa MW: 31890.6 Da PI: 6.3531

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004490019.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.7	8.5e-18	74	127	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe +++ e++ +LA+ l+L+ rq+ +WFqNrRa++k XP_004490019.1 74 KKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALNLQPRQIAIWFQNRRARWK 127 456899***********************************************9 PP
2	HD-ZIP_I/II	130.4	6.9e-42	73	164	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekkrrl+ eqvk+LE+sFe +kLeperK++lar+L+lqprq+a+WFqnrRAR+ktkqlEkdy++Lkr+yda+k +n++L++++++L++el XP_004490019.1 73 EKKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALNLQPRQIAIWFQNRRARWKTKQLEKDYDVLKRQYDAVKLDNDALQTQNQKLQAELL 164 69**************************************************************************************9985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.37E-19	65	131	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.297	69	129	IPR001356	Homeobox domain
SMART	SM00389	7.4E-18	72	133	IPR001356	Homeobox domain
CDD	cd00086	1.56E-15	74	130	No hit	No description
Pfam	PF00046	4.0E-15	74	127	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.0E-18	76	136	IPR009057	Homeodomain-like
PROSITE pattern	PS00027	0	104	127	IPR017970	Homeobox, conserved site
Pfam	PF02183	5.7E-16	129	169	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MAFFQANFML QTPHHHDDHH HPPPSLNSIL PQDYHGGPSF LGKRSMSFSS GIELGEEVNA 60 EEDLSDDGSQ AGEKKRRLNM EQVKTLEKSF ELGNKLEPER KMQLARALNL QPRQIAIWFQ 120 NRRARWKTKQ LEKDYDVLKR QYDAVKLDND ALQTQNQKLQ AELLALKNRE PIESINLNIK 180 ETEGSSSNRS ENSSDIKLDI SRTQASDSPL STHHTFFPPS ARPAGIAQLF QTTSSSRPEI 240 QCQKIDQMVV KEESLSNMFC GMDDQTGFWP WLEQQHFN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	121	129	RRARWKTKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269\|PubMed:11292072}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004490019.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004490019.1	0.0	homeobox-leucine zipper protein ATHB-13
Swissprot	Q8LC03	1e-115	ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13
TrEMBL	A0A1S2XIW9	0.0	A0A1S2XIW9_CICAR; homeobox-leucine zipper protein ATHB-13
STRING	XP_004490019.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1271	33	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69780.1	1e-105	HD-ZIP family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ribone PA,Capella M,Chan RL Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development. J. Exp. Bot., 2015. 66(19): p. 5929-43 [PMID:26136262] Wang X, et al. Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana. Sci China Life Sci, 2018. 61(1): p. 79-87 [PMID:28887625] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]